Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00960
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.1  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   5.5  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   7.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   9.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.5  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 295 STPKYNCHLYNLIP 254
           +TP+YN HLY   P
Sbjct: 82  TTPEYNNHLYGSTP 95


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +3

Query: 504 YFICFSAYYLLSVLF 548
           +FIC++ YY++S+ +
Sbjct: 269 FFICWTPYYVMSLWY 283


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 139 NNHIINLSKYS*ENVHRGVTYHCLELI 59
           NN+I N+S Y+ +N +    Y+ +  I
Sbjct: 87  NNYISNISNYNNDNNYNKKLYYNINYI 113


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 412 VALKKWYSLKCVSIIKCLEKSRTLNCLI 495
           V L  W+  K +   + L  +RT+N ++
Sbjct: 66  VLLSVWWDYKGIVYFELLSPNRTINSVV 93


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 5/17 (29%), Positives = 14/17 (82%)
 Frame = +3

Query: 504 YFICFSAYYLLSVLFIY 554
           +FIC++ +++  +L++Y
Sbjct: 269 FFICWAPFHVQRLLYVY 285


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 660 SFKCNYVNRSITFIVNIFSIFK*ICEVLLKLC 755
           +F  NYVN+ +T+   I  +     +  L +C
Sbjct: 57  NFNLNYVNKGVTYKHTIIEMDSNPIKTALSVC 88


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 139 NNHIINLSKYS*ENVHRGVTYHCLELI 59
           NN+I N+S Y+  N +    Y+ +  I
Sbjct: 87  NNYISNISNYNNNNNYNKKLYYNINYI 113


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 139 NNHIINLSKYS*ENVHRGVTYHCLELI 59
           NN+I N+S Y+  N +    Y+ +  I
Sbjct: 325 NNYISNISNYNNNNNYNKKLYYNINYI 351


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 412 VALKKWYSLKCVSIIKCLEKSRTLNCLI 495
           V L  W+  K +   + L  +RT+N ++
Sbjct: 188 VLLSVWWDYKGIVYFELLPPNRTINSVV 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,855
Number of Sequences: 438
Number of extensions: 4206
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)