Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00959
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      28   0.088
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      28   0.088
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   4.4  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   4.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 27.9 bits (59), Expect = 0.088
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 397 INKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSRGNRTESISKSLTRN 555
           +NKH+DL   LS  L +N D+     +    N  K  S  N  E + K L +N
Sbjct: 288 LNKHEDLPQDLSMKLSKNNDQCLDLSKTKETNLEK--SNLNHNEQLRKYLCKN 338


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 0.088
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 397 INKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSRGNRTESISKSLTRN 555
           +NKH+DL   LS  L +N D+     +    N  K  S  N  E + K L +N
Sbjct: 180 LNKHEDLPQDLSMKLSKNNDQCLDLSKTKETNLEK--SNLNHNEQLRKYLCKN 230


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 259 ELLNNAESNTINFSYKLWTTGHQNIVQSCFPLEFRLILDD 378
           E L N  S+   +  ++WTTG    V++     +R+IL +
Sbjct: 431 EYLENLPSD--KYIIQIWTTGSDPQVRNLLDNGYRVILSN 468


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 652 CRR*ITKATFYFSYSIADTRRP 717
           CR  +    FY+++S+A   RP
Sbjct: 114 CRDRVNPYLFYYAFSVALLHRP 135


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 247 LYDVRTIRFGLKLLASFGCIIVV 179
           L+D  ++R GLK   +F C+ V+
Sbjct: 29  LHDNPSLREGLKGARTFRCVFVL 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,542
Number of Sequences: 336
Number of extensions: 3427
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)