Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00959
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    28   1.5  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    28   1.5  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   4.7  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   4.7  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.7  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   4.7  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   8.2  

>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 163

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
 Frame = +1

Query: 310 WTTGHQNIVQSCFPLEFRLI---LDDKKDCKIIN---KHDDLYMTLSKDLDQNGDRDAYG 471
           W T     ++S  P   + I   L  KK+ + I     HD+L   L+K  D+  ++ +  
Sbjct: 68  WVTSKNEKLKSLPPALKKKIERQLQKKKEAEKIEGGKNHDNLKRKLNKVGDELNEQQSDT 127

Query: 472 DEDDHKNSWKFMSRGNRTESIS 537
           D+DD  +  +  SR  R  + S
Sbjct: 128 DDDDDDSKARITSRSKRANAQS 149


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 677 VAFVIHRLQVPLTCAVCSIVR*EHSTLIVLHRITHLQTLIVFRVKDFEID 528
           +AFV H L++P++CAV         T I  H    +  +  FR  D +ID
Sbjct: 11  LAFVAHALEIPISCAVSH----NEQTEIFPHGTIDIPEM-TFRPSDSQID 55


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 352 LEFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGD 456
           LE+ L+L  +   K+IN HD ++ TL   L    D
Sbjct: 457 LEWVLLLQRRTGGKLINMHDPIFQTLLLQLSDPSD 491


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 199 KMRATSIRTEWFVHHKEHSTELL---NNAESNTINFSYKLWTTGHQNIVQSCFPLE 357
           K+R+TSI    FVH    S  LL   N  E N ++    ++ TG  N +++   +E
Sbjct: 14  KVRSTSIEYPIFVHSGSISAMLLTLVNALECNDVDEGVLVYPTGSTNPMENILRME 69


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 159 TIQSFPLTTMMQPKDASNFNPNRMVR 236
           T++  PL+ M + KD+S F  NR+++
Sbjct: 209 TVEPTPLSFMSEMKDSSQFYANRVMK 234


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +3

Query: 591 DDERRVFSSDDATDSTSQWYLQAMNH 668
           D  R++  S D+ + +++W+LQ ++H
Sbjct: 452 DQSRKLDFSPDSEEKSTKWFLQQIDH 477


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 570 QMGDPVKDDERRVFSSDDATDSTSQWYLQAMNHKGDLL 683
           ++GD VK+ +     + +  DSTS+W L   N  G  +
Sbjct: 562 EIGDYVKELDEESKKAIENKDSTSEWLLHLYNFFGSAI 599


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 355 EFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 495
           E   + D++ D + +   D+  +  S D+ ++GD     DEDD K+S
Sbjct: 345 EAEWVADEEDDGEDLESEDE-EVDNSDDIVEDGDNAFVDDEDDDKDS 390


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 591 DDERRVFSSDDATDSTSQW 647
           +DE  V+SSD +T+S+SQ+
Sbjct: 328 EDEESVYSSDVSTESSSQF 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,133
Number of Sequences: 5004
Number of extensions: 58823
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)