Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00959
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0512 - 4259162-4259849,4260209-4260432,4260854-4261071,426... 30 1.6
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 30 2.1
03_05_0625 - 26225201-26225879,26226706-26227553 29 2.8
11_01_0650 - 5265106-5265305,5265972-5266049,5266391-5266544,526... 29 3.7
07_03_0149 - 14452654-14452666,14452943-14454699,14454886-144549... 29 3.7
08_02_1337 - 26238506-26238737,26239728-26240703,26241266-26242802 29 4.9
08_02_1465 - 27319377-27319405,27319936-27320101,27320336-273204... 28 6.5
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934... 28 6.5
>05_01_0512 -
4259162-4259849,4260209-4260432,4260854-4261071,
4261154-4261234,4261342-4262299
Length = 722
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 238 HHKEHSTELLNNAESNTINFSYKLWTTGHQNIVQS 342
HH +T L N E + + S+K+W T H++ V+S
Sbjct: 530 HHHRAATHLWN--ELDCFSSSFKIWVTAHKSYVES 562
>10_08_0959 -
21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Frame = +1
Query: 361 RLILDDKKDCKIINKHDDLYMTLS------KDLDQNGDRDAYGDEDDHKNSWKFMSRG-N 519
RL++DD +D K +++ D+ + L K ++Q+ + Y ++ ++ W F G +
Sbjct: 478 RLVVDDNEDIKKLDRELDIEVILQWRMLAHKFVEQSAETHQYAQQNKQQSWWSFGWTGSS 537
Query: 520 RTESISKSLT 549
+ E SKS +
Sbjct: 538 KDEGDSKSFS 547
>03_05_0625 - 26225201-26225879,26226706-26227553
Length = 508
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +1
Query: 310 WTTGHQNIVQSCFPLEFR----LILD-DKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGD 474
W H+N + S FP + R L+ D DKKD K D + D + D D G+
Sbjct: 341 WVPKHENNLDSVFPRQTRRRWMLLQDLDKKDSTTFRKEHDEEIDFEWSSDGDDDSDHRGN 400
Query: 475 EDDHK 489
+++
Sbjct: 401 VPEYR 405
>11_01_0650 -
5265106-5265305,5265972-5266049,5266391-5266544,
5266635-5266701,5266723-5266796,5266910-5267794
Length = 485
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 367 ILDDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSRGNRTES 531
I DD +D DD + D D++ D D+Y D+DD GN ++
Sbjct: 428 IFDDDEDEDEDRDGDDDEDSYEDDDDKDEDEDSYEDDDDEDEDEDSYEEGNEDDN 482
>07_03_0149 -
14452654-14452666,14452943-14454699,14454886-14454990,
14455808-14455978,14456309-14456641,14456900-14457492,
14458864-14458906
Length = 1004
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +2
Query: 80 TLSVIIATFFNMSVEASDSGKSDRKLYNSVISADYDDATKRCEQLQSEPNGSYIIKNTVR 259
T + +I T + +++ K V+ +D +D +RCEQL SE N
Sbjct: 82 TANSLITTRMDANMDTPLEQKQKDSSAIIVLDSDDEDEAERCEQLASENNKQQAPSGPTS 141
Query: 260 SCLT 271
C T
Sbjct: 142 PCTT 145
>08_02_1337 - 26238506-26238737,26239728-26240703,26241266-26242802
Length = 914
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 89 VIIATFFNMSVEASDSGKSDRKLYNSVISADYDDATKRCEQLQSEPNGS 235
++ +T N +V + +SDRK +S+D + C S+P+GS
Sbjct: 643 MMASTNVNRTVYGDQAEQSDRKTCQRELSSDLIRLSVECSSSSSQPHGS 691
>08_02_1465 -
27319377-27319405,27319936-27320101,27320336-27320444,
27320865-27321448
Length = 295
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 403 KHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 495
KH DLY+ S+ RD+Y D+DDH S
Sbjct: 219 KHPDLYLGKSEK-----GRDSYDDDDDHHES 244
>05_03_0184 +
9339939-9340896,9341003-9341083,9341166-9341383,
9341796-9342019,9342409-9343096
Length = 722
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 238 HHKEHSTELLNNAESNTINFSYKLWTTGHQNIVQS 342
HH+ + L N E + + S+++W T H++ V+S
Sbjct: 530 HHRRAAAHLWN--ELDCFSSSFRIWVTAHKSYVES 562
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,975,561
Number of Sequences: 37544
Number of extensions: 357348
Number of successful extensions: 905
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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