Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00958
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   120   2e-28
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   120   2e-28
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    29   0.96 
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    26   6.8  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    26   6.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.8  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   9.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.0  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  120 bits (290), Expect = 2e-28
 Identities = 53/73 (72%), Positives = 63/73 (86%)
 Frame = +1

Query: 544 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 723
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 724 QPNSAIRKCVRVQ 762
           QPNSAIRKCVRVQ
Sbjct: 61  QPNSAIRKCVRVQ 73


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  120 bits (290), Expect = 2e-28
 Identities = 53/73 (72%), Positives = 63/73 (86%)
 Frame = +1

Query: 544 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 723
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 724 QPNSAIRKCVRVQ 762
           QPNSAIRKCVRVQ
Sbjct: 61  QPNSAIRKCVRVQ 73


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 670 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 762
           G+   +G+      V+ K+PNSA+RK  RV+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVR 77


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = -1

Query: 542 WIARHQSVTLTISVNLNLLSRKNKI-LGPLGHSRNGYDGINVTAAAGCN*AAPQRSSNKE 366
           W A H S  +  + N+N L       L  +GH    +   N+    GC    P    + +
Sbjct: 112 WAASHFSKFVEYNANINKLHYDAATDLYIVGHGDTQWQAKNIIITTGCQPYIPPLYKSVD 171

Query: 365 NPGICSSFRY 336
           +P I  S ++
Sbjct: 172 SPLIVHSSKF 181


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 484 PEKIKSSGLSDTAVMDMMVSTLQQQRAVTEQLRR-EAAIKRIPVSVAVSDIIKYINEHEQ 308
           P +   + L   AV  +    L+++R  +++    E  I  +  ++A   +IKY  +HE 
Sbjct: 432 PSEEDETKLHQDAVDTVAAEFLEERRFESDEEEDVEPQISNVEAAMAFEVLIKYFEQHEN 491

Query: 307 ED 302
            D
Sbjct: 492 GD 493


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 606  SLFTTVVHVLTRRSYSSGFTHLDSTTPIGDFDNFSK 499
            S F    + +T R  S+ F    S  P+  F+NF+K
Sbjct: 3883 STFRNTSNTMTSRFVSNDFNSTISLQPVVQFNNFTK 3918


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 607 WADKEFKKAHMGTKWKANPFGGASHAKGIV 696
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 613 PPIAVHDGGSRAYAP 569
           PP AV  GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,093
Number of Sequences: 5004
Number of extensions: 57961
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)