Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00957
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    25   0.82 
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   3.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.8  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   7.6  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 424 ISALTTLGKCMCRTNFCIEANSSSDLGTANLA-PSC 320
           ISAL    +  C++N+C +A  + D     L+ P+C
Sbjct: 18  ISALNGAWRWECKSNYCQKAPITPDTEATGLSLPAC 53


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 224 CDCTYAIAMKKKEIANSLIFVV 159
           C C Y   M K  + N+L F+V
Sbjct: 273 CYCYYNSKMTKDGVYNTLFFIV 294


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 409  TLGKCMCRTNFCIEANSSSDLGTAN 335
            TL K +C T + + A + + +GT +
Sbjct: 1453 TLEKLLCGTRYQVYAKAYNSIGTGD 1477



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 227  GCDCTYAIAMKKKEIANSLIFVVNNI 150
            GC   Y +   KK+ +   I V NN+
Sbjct: 1518 GCPMLYFVIEHKKKTSTEWIQVSNNV 1543


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 624 TDDNLTYAKRPSIQ 665
           TD  L Y KRP ++
Sbjct: 97  TDPRLAYGKRPGVE 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,673
Number of Sequences: 336
Number of extensions: 3536
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)