Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00957
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    28   1.6  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   2.7  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    26   4.7  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    25   8.3  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 508 VSSMF*PSIFFQTL*FSRLLMPSQAISLISALTTLGKCM 392
           VS  F  S+FFQ L F   L  ++ +++   +T  G C+
Sbjct: 340 VSQFFLYSVFFQGLWFGNHLATTKRVNVGQVVTVFGSCL 378


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 310 SLALVQFCA*YTSL*AIPTPFLARNHQLAATAH 212
           SLA+ QFC  +T L   P P++  + Q   TA+
Sbjct: 339 SLAVYQFCLDFTRLNRTPEPYVRSSLQALITAN 371


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 543 AATVMTQQSLTAPASMPSTLD*ETGGATDDNLTYAKRPSIQFSLCI*RNKL 695
           A TV   +  TA  S+   +D +      DN+    +PS   SLC  +N+L
Sbjct: 228 ALTVEATKLATAFQSLQVNIDNKVDEILKDNIVSYHQPSGTLSLCFSKNEL 278


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 294 WTKAKEYCEQEGAKLAVPKSEEEFASIQK 380
           W+K KE  E+   +    KS++EF   QK
Sbjct: 519 WSKQKEVKEKRNTRREKRKSKKEFLKAQK 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,445
Number of Sequences: 5004
Number of extensions: 59840
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)