Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00957
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    29   3.7  
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907...    29   3.7  
05_04_0409 - 21050479-21050637,21050732-21050872,21051170-210515...    28   6.5  
01_05_0666 + 24132641-24132768,24134854-24134860,24135042-241352...    28   6.5  
04_04_0484 - 25570798-25570964,25572641-25572679,25572718-255728...    28   8.6  
03_05_0429 - 24157060-24157671,24158000-24158468,24158679-241587...    28   8.6  

>11_04_0236 +
           15215386-15216197,15216854-15218888,15219131-15220017,
           15222420-15226194
          Length = 2502

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 403 QVWLTPK-SNLSLGWASTTWKITKSGRISMVKTLKTRISHLDGS 531
           ++W+ P   + S+G+A+    +   G++S ++ LKTRI   D S
Sbjct: 669 ELWIYPAMKDFSMGFATAMQFVKDLGKLSELRVLKTRIHGWDQS 712


>01_01_1145 +
           9073973-9074281,9075440-9075998,9076088-9076241,
           9077475-9077565,9077722-9077793,9077879-9078390,
           9078854-9078923,9079514-9079579,9080266-9080570,
           9080872-9081006,9081141-9081204,9081429-9081574,
           9081669-9081773,9082310-9082490
          Length = 922

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 524 TGQDNGRGYSDDPAEPHCAGVDAINPGLRD 613
           TG+ N   YS+D  +PH   VD +  G  D
Sbjct: 428 TGECNKDAYSEDEKKPHPRSVDCVGMGASD 457


>05_04_0409 -
           21050479-21050637,21050732-21050872,21051170-21051541,
           21051699-21051701
          Length = 224

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +1

Query: 82  CHKEIFKVPVPLET 123
           CHK+I +VP+PLET
Sbjct: 101 CHKQIDRVPLPLET 114


>01_05_0666 +
           24132641-24132768,24134854-24134860,24135042-24135230,
           24136017-24136185,24136299-24136744,24137540-24137563,
           24137736-24137828,24138806-24138884,24138979-24139063,
           24139479-24139788,24140471-24140614
          Length = 557

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
 Frame = +1

Query: 82  CHKEIFKVPVPLET---HK*ITNYRVMLFTTKMRLLAISFFFIAIAY----VQSQPIDGY 240
           C K + KVP P ET   H  I N R+ +   + ++L +S+   +I++    + +QP+  +
Sbjct: 411 CSKGLLKVPKPSETLLGHLTINNIRMGIRQREEQVLMLSYEVCSISFLCLNIFAQPL--F 468

Query: 241 VLEKELV*PTNWCIKHKT 294
            L+K+ V  T+ C +  T
Sbjct: 469 FLQKKAV-STSHCSQPNT 485


>04_04_0484 -
           25570798-25570964,25572641-25572679,25572718-25572869,
           25572975-25573090,25573196-25573363,25574202-25574300,
           25574450-25574650,25575369-25575689
          Length = 420

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 397 TFQVWLTPKSNLSLGWASTTWKITKSGRISMVKTLKTRISHLDGS 531
           + QVW  P+ N  +  +S   ++  SG +   K  + R+  +DGS
Sbjct: 89  SMQVWALPRYNFQVMDSSAAEQLNGSGELFAKKYPRLRVRLIDGS 133


>03_05_0429 -
           24157060-24157671,24158000-24158468,24158679-24158752,
           24159231-24159280,24159368-24159449,24159526-24159575,
           24159666-24159708,24159804-24159884,24159988-24160033,
           24160151-24160197,24160358-24160423,24160701-24160767,
           24160913-24160998
          Length = 590

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 581 RRSEALLGHHCSRDRYLDPSKCEIRVFNVLTID 483
           RRS      HC  D+ +   KC +  F+++ +D
Sbjct: 463 RRSPTPTPQHCVIDQSITKDKCMVEAFHIIDVD 495


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,625,585
Number of Sequences: 37544
Number of extensions: 377732
Number of successful extensions: 949
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)