Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00957
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.1  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   5.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.7  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 560 GHHCSRDRYLDPSKCEIRVFNVLTIDILPDFVI 462
           G++C  D Y+     E R+   LT+ + P+ V+
Sbjct: 226 GNNCEIDMYMRRKCQECRLKKCLTVGMRPECVV 258


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 592 HQPWTKRLVVPPTTTLRMPKDRQSSL 669
           H+P TK L VPP T +   K   S +
Sbjct: 135 HRPDTKDLPVPPLTEVFPDKYMDSGI 160


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 560 GHHCSRDRYLDPSKCEIRVFNVLTIDILPDFVI 462
           G++C  D Y+     E R+   LT+ + P+ ++
Sbjct: 23  GNNCEIDMYMRRKCQECRLKKCLTVGMRPECMV 55


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 444 GINNLENYKVWKNIDGQNIED 506
           G+NN+E Y V  N   +N+ +
Sbjct: 193 GMNNIETYIVNTNYSSKNMRE 213


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 393 CVELIFVLKRIL 358
           C+E++FVLKR L
Sbjct: 233 CLEVVFVLKRRL 244


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 570 LTAPASMPSTLD*ETGGATDDNLTYAKRPSI 662
           L++ A  P+ L+  T G    +  Y+KRP +
Sbjct: 637 LSSGAKSPTVLEELTHGTLAASTLYSKRPDL 667


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 570 LTAPASMPSTLD*ETGGATDDNLTYAKRPSI 662
           L++ A  P+ L+  T G    +  Y+KRP +
Sbjct: 637 LSSGAKSPTVLEELTHGTLAASTLYSKRPDL 667


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 570 LTAPASMPSTLD*ETGGATDDNLTYAKRPSI 662
           L++ A  P+ L+  T G    +  Y+KRP +
Sbjct: 637 LSSGAKSPTVLEELTHGTLAASTLYSKRPDL 667


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,923
Number of Sequences: 438
Number of extensions: 3821
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)