Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00956
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical ...    44   1e-04
U10438-10|AAA19088.2|  345|Caenorhabditis elegans Hypothetical p...    30   1.6  
AC024806-4|AAF59525.1|  192|Caenorhabditis elegans Hypothetical ...    28   6.5  

>AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical
           protein C30F12.1 protein.
          Length = 360

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/55 (36%), Positives = 38/55 (69%)
 Frame = +3

Query: 345 SLSDNSVGSNIYHPNRKNINKTGLRMIVIDGSNVAVQHSRYKLFSVRGLKICIDF 509
           S++ +S  ++   P++ N + + LR +V+DGSNVA+ H R ++FS  GL+ C+++
Sbjct: 203 SIATSSPATSSSTPSKYNPDPS-LRAVVVDGSNVAMLHGRKEVFSCAGLRECLNY 256


>U10438-10|AAA19088.2|  345|Caenorhabditis elegans Hypothetical
           protein B0280.10 protein.
          Length = 345

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 503 NAYFQTTNGEQFISAVLHCYIATVNHNH 420
           +++F   N EQF+  VL+C    V +NH
Sbjct: 202 DSWFNDENSEQFVQYVLNCTTCHVEYNH 229


>AC024806-4|AAF59525.1|  192|Caenorhabditis elegans Hypothetical
           protein Y52E8A.2 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 16  NVETINLTKEINSDSYVTIDLADSKCTFTSDDVICIDDTVK 138
           ++ +++ +  I+S S    +L+D++C    DDVI  + T+K
Sbjct: 116 SIPSVSFSSSISSSS---AELSDARCLICLDDVISTEKTIK 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,510
Number of Sequences: 27780
Number of extensions: 263543
Number of successful extensions: 668
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)