Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00954X
(426 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce... 27 0.92
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 1.2
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 1.6
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 2.1
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 26 2.8
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 26 2.8
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 4.9
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 25 4.9
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 25 6.5
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 6.5
>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 56
Score = 27.5 bits (58), Expect = 0.92
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 309 EAGRQCSHVQRPAGLGRQQGLN*SQP*LEAY 401
+ RQC+H R GL R+ GLN S+ Y
Sbjct: 16 KGSRQCAHTGRRLGLIRKYGLNISRQSFREY 46
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.1 bits (57), Expect = 1.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 326 FTRTTTGWPGETARTKLVT 382
+T TTGW G T T +VT
Sbjct: 711 YTTITTGWTGSTTLTSIVT 729
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.6 bits (56), Expect = 1.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 157 ARMRT*RVRMRGPDVDRRTPRDSH 228
+R R+ R R PD DRR+P+ +H
Sbjct: 145 SRSRSPDGRSRSPDYDRRSPKRNH 168
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 26.2 bits (55), Expect = 2.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 2 TRTWLSSTSNFLWICCSSTCRPGATTRQTTITKSLQDDNVGSVIKEL 142
T ++S F++IC TC P + K + +N+ S +++L
Sbjct: 1287 TSATINSRVPFVYICEDETCIPTDLQSDGVLLKPITCENIESCLRKL 1333
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 2.8
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 178 VRMRGPDVDRRTPRDSH*LIPFGNQMITKQARVQIIGRYHNQALKLVANVHTY 336
++ P +DR + + F N + K++ V+ + YH+ AL N H Y
Sbjct: 197 IKNETPTIDRCDFPNYVPMFAFPNDITIKESDVRPVSTYHSFALTSDNNSHLY 249
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 2.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 10 VAFLNKQLLMDLLFKYVSTGGYNK-ADDYHEVLAR 111
+AFL L + Y GGYN+ A+DY V R
Sbjct: 106 MAFLQTLWSARLTYNYYRKGGYNRGAEDYRWVRVR 140
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.0 bits (52), Expect = 4.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 19 LNKQLLMDLLFKYVSTGGYNKADD 90
L K++ +D LFKY + GY+ +
Sbjct: 1238 LKKEVHLDFLFKYEPSAGYSPVSE 1261
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.0 bits (52), Expect = 4.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 234 YSLRQSNDHQAS*GTNHRKISQSSPEAGRQC 326
Y L +DHQ +R I+Q+ P+ QC
Sbjct: 172 YQLLNCDDHQGILKKLNRNIAQARPDITHQC 202
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 24.6 bits (51), Expect = 6.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 408 YRDKLPAKAVTSLVLAVSPGQPVVVRVNIGDQ 313
++DKL +AV L ++ + V +VN GD+
Sbjct: 596 HKDKLDQQAVEDLRSKITDLRETVAKVNAGDE 627
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 24.6 bits (51), Expect = 6.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 426 QLVILPYRDKLPAKAVTSLVLAVSP-GQPVVVRVNIGD 316
+LVILP LP++ + + P G+ VV+ NI +
Sbjct: 752 ELVILPVYSALPSEIQSRIFEPAPPGGRKVVIATNIAE 789
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,007
Number of Sequences: 5004
Number of extensions: 36259
Number of successful extensions: 111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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