Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00954X
(426 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0909 - 29312875-29313135,29313235-29313556,29313676-293139... 29 1.6
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 29 2.1
09_02_0206 - 5783868-5783986,5784422-5784485,5784552-5784620,578... 28 2.7
09_02_0602 - 11118788-11119178,11119262-11119451,11119590-111196... 28 3.6
12_02_1029 - 25521641-25521852,25521978-25522035,25522142-255221... 27 4.8
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 27 4.8
10_08_0757 + 20367348-20367560,20367657-20367904,20371406-203717... 27 6.3
10_06_0104 + 10786613-10788040 27 6.3
03_01_0153 - 1215368-1215628,1216654-1216978,1217032-1217198 27 6.3
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552... 27 6.3
02_01_0127 - 926333-926359,926637-926708,926928-927032,927129-92... 27 8.3
>04_04_0909 -
29312875-29313135,29313235-29313556,29313676-29313923,
29314032-29314259
Length = 352
Score = 29.1 bits (62), Expect = 1.6
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = -1
Query: 366 LAVSPGQPVVVRVNIGDQLQGLIVISSDDLYPSLLGDHLI-AEGNK-SVTIAWCPAIHIW 193
+AV+P +V +NIGDQ+Q L S+D Y S+L ++ +E + SV +CP+
Sbjct: 248 VAVNPVPDALV-INIGDQIQAL----SNDRYKSVLHRVIVNSESERISVPTFYCPSPDAV 302
Query: 192 SAHANTLGSHARRSLS 145
A A L A L+
Sbjct: 303 IAPAGALVDGALHPLA 318
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 28.7 bits (61), Expect = 2.1
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = -1
Query: 321 GDQLQGLIVISSDDLYPSLLGDHLIAEGNKSVTIAWCPAIHIWSAHANTLGSHARRSLST 142
G + + + ++ + + L+A G + + A+H W + + L
Sbjct: 333 GSSISDDLSLEEENNFLGICSQELLARGTELLKRTRKGALH-WKVVSVYINRMGLVMLKM 391
Query: 141 SSLITEPTLSSCKDFVIV-VCLVVA--PGRHVLEQQIHKK 31
S T++ K V++ VC VA PGRH+LE H++
Sbjct: 392 KSRHVAGTITKKKKSVVIDVCKDVAAWPGRHLLEDGEHRR 431
>09_02_0206 -
5783868-5783986,5784422-5784485,5784552-5784620,
5784698-5784940,5786844-5786912,5786988-5787212,
5787289-5787532,5787607-5787716,5787948-5788016,
5788988-5789042,5789063-5789097,5789422-5789514,
5789545-5789595
Length = 481
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 210 PAIHIWSAHANTLGSHARRSLSTSSLITEPTLS-SCKDFVIVVCLVVAP 67
P + +W HA + RRS T++ PT + + ++ +C V AP
Sbjct: 16 PRVQLWPGHARASPAGGRRSRWTTAAARHPTAAVNSENLWCSLCRVFAP 64
>09_02_0602 -
11118788-11119178,11119262-11119451,11119590-11119658,
11119890-11120016,11120134-11120399,11120760-11120872,
11121693-11121764,11121860-11121998,11124277-11124360,
11125278-11125771,11127604-11128187
Length = 842
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 129 LSRSWSTDSCAHENLTCSHARTRCGSPDTTR*SLTYSLRQSNDH 260
+ ++W D C NL + R GS +T R ++ L SN H
Sbjct: 400 IKKNWMNDPCFPSNLVWNGVRCSTGSDNTMR-IISLDLSNSNLH 442
>12_02_1029 -
25521641-25521852,25521978-25522035,25522142-25522191,
25522280-25522585,25522666-25523068,25524573-25524624,
25525523-25525572,25526151-25526306,25526987-25527286
Length = 528
Score = 27.5 bits (58), Expect = 4.8
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = -1
Query: 285 DDLYPSLLGDHLIAEGNKSVTIAWCPAIHIWSAHANTLGSHARRSLSTSSLITEPTLSSC 106
D+ + ++ L+A G + + A+H W + + L S TL+
Sbjct: 398 DNNFLTICSQELLARGTELLKRTRKGALH-WKVVSVYIHRTGVVMLKMKSRHVAGTLTKK 456
Query: 105 KDFVIV-VCLVVA--PGRHVLEQQIHKK 31
K V+V VC VA PGRH+LE H++
Sbjct: 457 KKNVVVDVCRDVAAWPGRHLLEGGEHRR 484
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.5 bits (58), Expect = 4.8
Identities = 21/58 (36%), Positives = 25/58 (43%)
Frame = +3
Query: 90 LSRSPCKMITSVPLSRSWSTDSCAHENLTCSHARTRCGSPDTTR*SLTYSLRQSNDHQ 263
L RSP SRS+S H + HARTR SP R Y+ Q +HQ
Sbjct: 549 LCRSPRPSPPGQSHSRSYSRSHSLHLH---DHARTRSCSPAPGRQDDQYASPQRKEHQ 603
>10_08_0757 +
20367348-20367560,20367657-20367904,20371406-20371730,
20372299-20372541
Length = 342
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -1
Query: 366 LAVSPGQPVVVRVNIGDQLQGL 301
+AV+P QP + +NIGDQLQ L
Sbjct: 244 IAVNP-QPGALVINIGDQLQAL 264
>10_06_0104 + 10786613-10788040
Length = 475
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 311 SWSPMFTRTTTGWPGETARTKLVTALAGSL 400
SW+ M GWP A TKL + G L
Sbjct: 326 SWAEMPVGMGEGWPARQAGTKLSAVIDGDL 355
>03_01_0153 - 1215368-1215628,1216654-1216978,1217032-1217198
Length = 250
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -1
Query: 366 LAVSPGQPVVVRVNIGDQLQGL 301
+AV+P QP + +NIGDQLQ L
Sbjct: 146 IAVNP-QPNALVINIGDQLQAL 166
>01_05_0801 +
25353708-25353914,25354307-25354429,25355035-25355205,
25355303-25355392,25355497-25355583,25355664-25355719,
25355812-25355905,25356032-25356144,25356211-25356283,
25356603-25356683,25356865-25356951,25357031-25357135,
25357279-25357385,25357481-25357541,25357931-25358158,
25359720-25360677,25360816-25360997,25361237-25361326,
25361422-25361709,25361844-25362056,25362560-25362784
Length = 1212
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 327 NIGDQLQGLIVISSDDLYPSLLGDHLIAEGN 235
N G L G + + D P L+GDHL G+
Sbjct: 787 NQGSNLFGWVARAEDHTSPGLIGDHLRKNGD 817
>02_01_0127 -
926333-926359,926637-926708,926928-927032,927129-927227,
927298-927381,927462-927518,927596-927671,927755-927807,
927899-927931,928100-928165,928556-928628,928721-928794,
929177-929237,929354-929536,929656-929703,929810-929868
Length = 389
Score = 26.6 bits (56), Expect = 8.3
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Frame = -1
Query: 351 GQPVVVRVNIGDQLQGLIVISSDDLYPSLLGDHLIAEGNKSVTI--AWCPAIH--IWSAH 184
G V+ V G LIVI + YP ++ D + +K T W P H I+ +
Sbjct: 95 GPKSVIEVRNGFTFLDLIVIQIESQYPRVVADEFLPWPSKGKTCKDGWYPPGHGDIFPSL 154
Query: 183 ANTLGSHARRSLSTSSLITE---PTLSSCKDFVIVVCLVVAPGRHVLE 49
N+ S T + + TL S +D V ++ + P HV E
Sbjct: 155 MNSGKLDLLLSQVTPKTLADVKGGTLISYEDKVQLLEIAQVPDAHVNE 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,790,383
Number of Sequences: 37544
Number of extensions: 278082
Number of successful extensions: 845
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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