Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00954X
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   4.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   4.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.8  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 177 TLGSHARRSLSTSSLITEPTLSS 109
           TLG H +   + SSL++  + SS
Sbjct: 170 TLGHHHQNGATPSSLVSSASASS 192


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = +2

Query: 11  WLSSTSNFLWICCSSTCRPGATTRQ 85
           W   T +     CS  C PG   +Q
Sbjct: 437 WARGTKDIPISACSLPCEPGMIKKQ 461


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = +2

Query: 11  WLSSTSNFLWICCSSTCRPGATTRQ 85
           W   T +     CS  C PG   +Q
Sbjct: 527 WARGTKDIPISACSLPCEPGMIKKQ 551


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 63  DRGLQQGRRLSRSPCKMITSVPLSRSWSTDSCA 161
           DR L  G R + +       +PLS SW  D  A
Sbjct: 619 DRDLHLGERTTLTCSVTRGDLPLSISWLKDGRA 651


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,764
Number of Sequences: 438
Number of extensions: 2779
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)