Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00953
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   2.0  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    26   2.7  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   3.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   6.2  

>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 223 KETNKFDDSFYLQNYRLHNVSLY 291
           KETN   D+ Y + YRL+NV L+
Sbjct: 259 KETNN-SDAGYTEPYRLYNVDLF 280


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 37  DITMKTDMVGRLPITDIYFKVNLMEKDLKISVENIKLC 150
           D T+K +   RL +   Y ++NL+EK ++   E I LC
Sbjct: 433 DPTLKRENRSRLVLQIFYHELNLLEKSMQ---ETIYLC 467


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 264  IL*IKRIVKFISLFRKFYWNFNL 196
            IL +   V F+ LFRK  WN  L
Sbjct: 959  ILLLSSFVNFVPLFRKVIWNLLL 981


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 34   VDITMKTDMVGRLPITDIYFKV 99
            +DIT+ +D++ +LP  D Y+ +
Sbjct: 1801 LDITLLSDILSQLPCPDAYYGI 1822


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,342
Number of Sequences: 5004
Number of extensions: 28060
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)