Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00953
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0536 + 30068881-30070383                                         28   3.5  
05_03_0679 + 16879370-16879400,16879586-16879716,16880178-168802...    27   6.0  

>01_06_0536 + 30068881-30070383
          Length = 500

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -2

Query: 239 NLLVSFENFIGILICYKPSHLGSYCTI*LKHNLMFSTEIFKSFSIKLTLK 90
           N++   + F+  + CY       YC+  L  N MF  +I +   I   L+
Sbjct: 140 NIVSDMQEFVAFVSCYPHMSRQPYCSYLLLENCMFGRQIEQERIINFLLE 189


>05_03_0679 +
           16879370-16879400,16879586-16879716,16880178-16880255,
           16880582-16880626,16880727-16880765,16881260-16881356,
           16881528-16881937
          Length = 276

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 182 HLGSYCTI*LKHNLMFSTEIFKSFSIKLTLKYISVIGSL 66
           HL   C    K N  F   I  +FSI+++L  I+++G L
Sbjct: 164 HLKVRCISEAKGNHCFELSISSTFSIEMSLSAITLLGML 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,248,126
Number of Sequences: 37544
Number of extensions: 135502
Number of successful extensions: 218
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)