Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00953
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical p...    32   0.15 
U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical pr...    30   0.59 
U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical pr...    28   2.4  
L12018-5|AAU87822.1|  557|Caenorhabditis elegans Twik family of ...    27   4.1  
AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical ...    27   7.2  

>Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.16 protein.
          Length = 279

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 239 NLLVSFENFIGILICYKPSHLGSYCTI*LKHNLMFSTEIFKS-FSIKLTLKYISV 78
           NL + F  F    +CY+P  L  YC I       F+  I KS F + L  K+++V
Sbjct: 23  NLYLLFSTFFTKKVCYRPELLLIYCKIAADICYSFTVSIMKSYFLVILCYKHLAV 77


>U97550-4|AAK18978.2|  773|Caenorhabditis elegans Hypothetical
           protein T20F7.1 protein.
          Length = 773

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 187 GL*QIKIPIKFSKETNKFDDSFYLQNYRLHNVSLYID 297
           GL +  I  K  +E +  D  +YLQNY + NV++ I+
Sbjct: 465 GLDESAIVDKMREENDASDRRYYLQNYEVRNVAIKIE 501


>U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical
           protein T10E10.3 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -2

Query: 212 IGILICYKPSHLGSYCT---I*LKHNLMFSTE-IFKSFSIKLTLKYISVIGS 69
           I I+ CY  SH+ S C    I L HN+++ST  ++ S  +  T+   S + +
Sbjct: 271 IAIVTCYIVSHIPSACLYVYINLFHNVLYSTRWMYTSVQVSTTVVTCSKVAN 322


>L12018-5|AAU87822.1|  557|Caenorhabditis elegans Twik family of
           potassium channelsprotein 7 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 231 SLFRKFYWNFNLLQTIPFGILL 166
           S F  FYW+F  + T+ FG L+
Sbjct: 396 SFFTSFYWSFITMTTVGFGDLM 417


>AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical
           protein T11F1.7 protein.
          Length = 523

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 25  CEYVDITMKTDMVGRLPITDIYFKVNLMEKDLKISVENIK 144
           C  + I   TD+  R  +TD++  +NL+   LKI   N+K
Sbjct: 63  CALLVINSSTDLTER-ELTDLFKDMNLLYGSLKIHDTNLK 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,821,978
Number of Sequences: 27780
Number of extensions: 142107
Number of successful extensions: 292
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)