Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00952
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein... 130 5e-32
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos... 130 5e-32
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 27 1.2
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 2.1
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 25 2.8
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 24 6.5
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo... 24 6.5
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 24 8.6
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 24 8.6
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 24 8.6
>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 130 bits (315), Expect = 5e-32
Identities = 59/82 (71%), Positives = 70/82 (85%)
Frame = +1
Query: 1 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 180
V KKADID+ KRAGE T EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK QL ++N+
Sbjct: 44 VCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNV 103
Query: 181 DSKLREDLERLKKIRAHRGMRH 246
DSKLREDLERLKKI+ HRG+RH
Sbjct: 104 DSKLREDLERLKKIQTHRGLRH 125
>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
S18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 152
Score = 130 bits (315), Expect = 5e-32
Identities = 59/82 (71%), Positives = 70/82 (85%)
Frame = +1
Query: 1 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 180
V KKADID+ KRAGE T EE+E+I+TI+ NP Q+KIP WFLNRQKDI DGK QL ++N+
Sbjct: 44 VCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLANNV 103
Query: 181 DSKLREDLERLKKIRAHRGMRH 246
DSKLREDLERLKKI+ HRG+RH
Sbjct: 104 DSKLREDLERLKKIQTHRGLRH 125
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 26.6 bits (56), Expect = 1.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 199 DLERLKKIRAHRGMRHYWG 255
D+ RL IR +RGMRH G
Sbjct: 76 DISRLVNIRCYRGMRHVNG 94
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 2.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 202 NLHGVLNPSWRRSAGCIYHQQYPFAYLGTSLVSY 101
N H ++PS R S+ +Y P Y ++ VSY
Sbjct: 495 NNHCAVSPSRRSSSNALYLATLPMGYERSNSVSY 528
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 2.8
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +1
Query: 25 LDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDL 204
L+ A TEE II+ N QY IP+ F+ +K+ + + +S +SK D
Sbjct: 105 LESNATAFTEELWSLIISASQN--QYGIPEKFILEKKEEISKLKDRTEASKEESKTVTDH 162
Query: 205 ERLKKIR 225
++ R
Sbjct: 163 SNRRESR 169
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 24.2 bits (50), Expect = 6.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 265 RTRSPSNVASLCERESS*ASPNLHGVLNPSWRRSAGCIYHQQY 137
R SP + L +ES A L +LN + RSA H +
Sbjct: 152 RPTSPKQIRELATQESRLAEHALRKILNVNQPRSADSPRHASF 194
>SPCC338.10c |cox5||cytochrome c oxidase subunit
V|Schizosaccharomyces pombe|chr 3|||Manual
Length = 174
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 19 IDLDKRAGECTEEEVEKIIT 78
+DLDKR G ++EE + +IT
Sbjct: 37 VDLDKRWGIMSQEEKDGLIT 56
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 79 IMSNPRQYKIPDWFLNRQKDIVDGKYSQ 162
+ NPR + + ++ L IV+ K+SQ
Sbjct: 583 LFRNPRNHLLLEYLLQAISSIVENKFSQ 610
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 225 ANLLEPLQIFTEF*IQVGGGQLAV 154
A L PLQI + ++VGGG+ A+
Sbjct: 37 AKELRPLQITSAREVEVGGGKKAI 60
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 250 SNVASLCERESS*ASPNLHGVLN 182
SNV S+CE S P LH +++
Sbjct: 217 SNVLSICEYVPSIKGPVLHAIID 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,304,597
Number of Sequences: 5004
Number of extensions: 23926
Number of successful extensions: 72
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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