Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00952
(369 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 138 1e-33
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 122 1e-28
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 121 2e-28
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 73 5e-14
03_01_0404 + 3138624-3140096 31 0.28
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 29 1.5
04_04_0883 + 29079315-29079715,29080918-29081038,29081127-290812... 27 4.6
03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084 27 4.6
02_05_1211 + 34956601-34956850,34956950-34957102,34957562-349576... 27 4.6
07_03_1624 + 28204892-28205024,28205160-28205242,28205305-282053... 26 8.1
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 138 bits (334), Expect = 1e-33
Identities = 57/83 (68%), Positives = 75/83 (90%)
Frame = +1
Query: 7 KKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDS 186
KKADID++KRAGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD
Sbjct: 42 KKADIDMNKRAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDM 101
Query: 187 KLREDLERLKKIRAHRGMRHYWG 255
KLR+DLERLKKIR HRG+RHYWG
Sbjct: 102 KLRDDLERLKKIRNHRGLRHYWG 124
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 122 bits (293), Expect = 1e-28
Identities = 57/99 (57%), Positives = 75/99 (75%), Gaps = 16/99 (16%)
Frame = +1
Query: 7 KKADIDLDKR----------------AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKD 138
KKADID++KR AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD
Sbjct: 46 KKADIDMNKRSGVVCYYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKD 105
Query: 139 IVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWG 255
DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWG
Sbjct: 106 YKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWG 144
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 121 bits (291), Expect = 2e-28
Identities = 49/73 (67%), Positives = 65/73 (89%)
Frame = +1
Query: 37 AGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLK 216
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLK
Sbjct: 74 AGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLK 133
Query: 217 KIRAHRGMRHYWG 255
KIR HRG+RHYWG
Sbjct: 134 KIRNHRGLRHYWG 146
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 73.3 bits (172), Expect = 5e-14
Identities = 32/48 (66%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Frame = +1
Query: 115 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWG 255
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWG
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWG 54
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.28
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 145 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 243
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 193 REDLERLKKIRAHRGMRHYWG 255
R +ERLK+IR +RG+RH G
Sbjct: 108 RVAIERLKEIRCYRGIRHKLG 128
>04_04_0883 +
29079315-29079715,29080918-29081038,29081127-29081246,
29081646-29081876,29081951-29082517
Length = 479
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 46 CTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGK-YSQLTSSNL 180
C EE ++ M P + + DW +N D+V+ + Y+++ + N+
Sbjct: 236 CNTEEDCALLASMLPPVEAALLDWAINLMADVVEHENYNKMNARNI 281
>03_06_0455 - 34054428-34054619,34054729-34054867,34054945-34055084
Length = 156
Score = 27.1 bits (57), Expect = 4.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 125 FRNQSGILYCLGFDMIVIIFSTSSSVHSPARLS 27
F N YCLG +I ++++T+ RLS
Sbjct: 40 FDNYPEYTYCLGISIIAVLYTTAQVTRDVHRLS 72
>02_05_1211 +
34956601-34956850,34956950-34957102,34957562-34957674,
34958092-34958198,34958289-34958404,34958502-34958577,
34958652-34958693,34958809-34958917,34959102-34959199,
34959297-34959390,34959517-34959642
Length = 427
Score = 27.1 bits (57), Expect = 4.6
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +1
Query: 13 ADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDS-- 186
+ +DLD R+G T V K T+ NP + ++ + + KD Y +LT+ N ++
Sbjct: 190 SSVDLDIRSGSNTRHVVLKRQTVTLNPVRSRMCE--IPGAKDNSKVGYIKLTTFNQNAAG 247
Query: 187 KLREDLERLKK 219
++E L++L++
Sbjct: 248 SVKEALQKLRE 258
>07_03_1624 + 28204892-28205024,28205160-28205242,28205305-28205376,
28205889-28205946,28206554-28206603,28207805-28207873,
28208183-28208317,28208410-28208581,28208663-28208754,
28208837-28209244,28209783-28210704,28211592-28211831,
28211898-28212229,28212460-28212608,28213265-28213841,
28214078-28214224,28214693-28214968,28215296-28215403,
28215634-28215839,28216079-28216217,28216329-28216982,
28218040-28218099,28218234-28218388,28218414-28218636,
28218729-28218773
Length = 1834
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 242 DITGASCAWSAH*DYWQERKNCWC 313
DI +C WS H D E +C C
Sbjct: 1709 DIILLNCGWSGHRDQGPEAPDCLC 1732
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,498,411
Number of Sequences: 37544
Number of extensions: 155852
Number of successful extensions: 471
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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