Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00952
(369 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69150-1|CAB56794.1| 152|Homo sapiens ribosomal protein S18 pro... 156 2e-38
BC106063-1|AAI06064.1| 152|Homo sapiens ribosomal protein S18 p... 156 2e-38
BC101788-1|AAI01789.1| 152|Homo sapiens ribosomal protein S18 p... 156 2e-38
BC101786-1|AAI01787.1| 152|Homo sapiens ribosomal protein S18 p... 156 2e-38
AL844527-17|CAI41848.1| 152|Homo sapiens ribosomal protein S18 ... 156 2e-38
AL713971-5|CAI17656.1| 152|Homo sapiens ribosomal protein S18 p... 156 2e-38
AL662827-19|CAI17530.1| 152|Homo sapiens ribosomal protein S18 ... 156 2e-38
AL662820-19|CAI18127.1| 152|Homo sapiens ribosomal protein S18 ... 156 2e-38
AL645940-16|CAI18076.1| 152|Homo sapiens ribosomal protein S18 ... 156 2e-38
AL031228-3|CAA20231.1| 152|Homo sapiens ribosomal protein S18 p... 156 2e-38
AL031228-2|CAI95617.1| 82|Homo sapiens ribosomal protein S18 p... 113 2e-25
BC071678-1|AAH71678.1| 74|Homo sapiens LOC645958 protein protein. 87 2e-17
EF015905-1|ABM64216.1| 1255|Homo sapiens period 2 protein. 28 8.2
D28114-1|BAA05660.1| 183|Homo sapiens MOBP protein. 28 8.2
D28113-1|BAA05659.1| 182|Homo sapiens MOBP protein. 28 8.2
BC119695-1|AAI19696.1| 81|Homo sapiens MOBP protein protein. 28 8.2
BC119694-1|AAI19695.1| 81|Homo sapiens MOBP protein protein. 28 8.2
BC075796-1|AAH75796.1| 81|Homo sapiens MOBP protein protein. 28 8.2
BC022471-1|AAH22471.1| 81|Homo sapiens myelin-associated oligo... 28 8.2
AC012485-1|AAX88976.1| 1255|Homo sapiens unknown protein. 28 8.2
AB002345-1|BAA20804.2| 1281|Homo sapiens KIAA0347 protein protein. 28 8.2
>X69150-1|CAB56794.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 156 bits (378), Expect = 2e-38
Identities = 68/85 (80%), Positives = 79/85 (92%)
Frame = +1
Query: 1 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 180
VL+KADIDL KRAGE TE+EVE++ITIM NPRQYKIPDWFLNRQKD+ DGKYSQ+ ++ L
Sbjct: 44 VLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGL 103
Query: 181 DSKLREDLERLKKIRAHRGMRHYWG 255
D+KLREDLERLKKIRAHRG+RH+WG
Sbjct: 104 DNKLREDLERLKKIRAHRGLRHFWG 128
>BC106063-1|AAI06064.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 156 bits (378), Expect = 2e-38
Identities = 68/85 (80%), Positives = 79/85 (92%)
Frame = +1
Query: 1 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 180
VL+KADIDL KRAGE TE+EVE++ITIM NPRQYKIPDWFLNRQKD+ DGKYSQ+ ++ L
Sbjct: 44 VLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGL 103
Query: 181 DSKLREDLERLKKIRAHRGMRHYWG 255
D+KLREDLERLKKIRAHRG+RH+WG
Sbjct: 104 DNKLREDLERLKKIRAHRGLRHFWG 128
>BC101788-1|AAI01789.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 156 bits (378), Expect = 2e-38
Identities = 68/85 (80%), Positives = 79/85 (92%)
Frame = +1
Query: 1 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 180
VL+KADIDL KRAGE TE+EVE++ITIM NPRQYKIPDWFLNRQKD+ DGKYSQ+ ++ L
Sbjct: 44 VLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGL 103
Query: 181 DSKLREDLERLKKIRAHRGMRHYWG 255
D+KLREDLERLKKIRAHRG+RH+WG
Sbjct: 104 DNKLREDLERLKKIRAHRGLRHFWG 128
>BC101786-1|AAI01787.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 156 bits (378), Expect = 2e-38
Identities = 68/85 (80%), Positives = 79/85 (92%)
Frame = +1
Query: 1 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 180
VL+KADIDL KRAGE TE+EVE++ITIM NPRQYKIPDWFLNRQKD+ DGKYSQ+ ++ L
Sbjct: 44 VLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGL 103
Query: 181 DSKLREDLERLKKIRAHRGMRHYWG 255
D+KLREDLERLKKIRAHRG+RH+WG
Sbjct: 104 DNKLREDLERLKKIRAHRGLRHFWG 128
>AL844527-17|CAI41848.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 156 bits (378), Expect = 2e-38
Identities = 68/85 (80%), Positives = 79/85 (92%)
Frame = +1
Query: 1 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 180
VL+KADIDL KRAGE TE+EVE++ITIM NPRQYKIPDWFLNRQKD+ DGKYSQ+ ++ L
Sbjct: 44 VLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGL 103
Query: 181 DSKLREDLERLKKIRAHRGMRHYWG 255
D+KLREDLERLKKIRAHRG+RH+WG
Sbjct: 104 DNKLREDLERLKKIRAHRGLRHFWG 128
>AL713971-5|CAI17656.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 156 bits (378), Expect = 2e-38
Identities = 68/85 (80%), Positives = 79/85 (92%)
Frame = +1
Query: 1 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 180
VL+KADIDL KRAGE TE+EVE++ITIM NPRQYKIPDWFLNRQKD+ DGKYSQ+ ++ L
Sbjct: 44 VLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGL 103
Query: 181 DSKLREDLERLKKIRAHRGMRHYWG 255
D+KLREDLERLKKIRAHRG+RH+WG
Sbjct: 104 DNKLREDLERLKKIRAHRGLRHFWG 128
>AL662827-19|CAI17530.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 156 bits (378), Expect = 2e-38
Identities = 68/85 (80%), Positives = 79/85 (92%)
Frame = +1
Query: 1 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 180
VL+KADIDL KRAGE TE+EVE++ITIM NPRQYKIPDWFLNRQKD+ DGKYSQ+ ++ L
Sbjct: 44 VLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGL 103
Query: 181 DSKLREDLERLKKIRAHRGMRHYWG 255
D+KLREDLERLKKIRAHRG+RH+WG
Sbjct: 104 DNKLREDLERLKKIRAHRGLRHFWG 128
>AL662820-19|CAI18127.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 156 bits (378), Expect = 2e-38
Identities = 68/85 (80%), Positives = 79/85 (92%)
Frame = +1
Query: 1 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 180
VL+KADIDL KRAGE TE+EVE++ITIM NPRQYKIPDWFLNRQKD+ DGKYSQ+ ++ L
Sbjct: 44 VLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGL 103
Query: 181 DSKLREDLERLKKIRAHRGMRHYWG 255
D+KLREDLERLKKIRAHRG+RH+WG
Sbjct: 104 DNKLREDLERLKKIRAHRGLRHFWG 128
>AL645940-16|CAI18076.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 156 bits (378), Expect = 2e-38
Identities = 68/85 (80%), Positives = 79/85 (92%)
Frame = +1
Query: 1 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 180
VL+KADIDL KRAGE TE+EVE++ITIM NPRQYKIPDWFLNRQKD+ DGKYSQ+ ++ L
Sbjct: 44 VLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGL 103
Query: 181 DSKLREDLERLKKIRAHRGMRHYWG 255
D+KLREDLERLKKIRAHRG+RH+WG
Sbjct: 104 DNKLREDLERLKKIRAHRGLRHFWG 128
>AL031228-3|CAA20231.1| 152|Homo sapiens ribosomal protein S18
protein.
Length = 152
Score = 156 bits (378), Expect = 2e-38
Identities = 68/85 (80%), Positives = 79/85 (92%)
Frame = +1
Query: 1 VLKKADIDLDKRAGECTEEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNL 180
VL+KADIDL KRAGE TE+EVE++ITIM NPRQYKIPDWFLNRQKD+ DGKYSQ+ ++ L
Sbjct: 44 VLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGL 103
Query: 181 DSKLREDLERLKKIRAHRGMRHYWG 255
D+KLREDLERLKKIRAHRG+RH+WG
Sbjct: 104 DNKLREDLERLKKIRAHRGLRHFWG 128
>AL031228-2|CAI95617.1| 82|Homo sapiens ribosomal protein S18
protein.
Length = 82
Score = 113 bits (272), Expect = 2e-25
Identities = 47/58 (81%), Positives = 54/58 (93%)
Frame = +1
Query: 82 MSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWG 255
M NPRQYKIPDWFLNRQKD+ DGKYSQ+ ++ LD+KLREDLERLKKIRAHRG+RH+WG
Sbjct: 1 MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 58
>BC071678-1|AAH71678.1| 74|Homo sapiens LOC645958 protein protein.
Length = 74
Score = 86.6 bits (205), Expect = 2e-17
Identities = 36/50 (72%), Positives = 44/50 (88%)
Frame = +1
Query: 106 IPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWG 255
+P WFLNRQKD+ DGKYSQ+ ++ LD+KL EDLERLKKIRA RG+RH+WG
Sbjct: 1 MPAWFLNRQKDVKDGKYSQVLANGLDNKLCEDLERLKKIRARRGLRHFWG 50
>EF015905-1|ABM64216.1| 1255|Homo sapiens period 2 protein.
Length = 1255
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 109 PDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIR 225
P W L D QL S NL++ L+ED E+LK ++
Sbjct: 1135 PIWLLMADADSSVMMTYQLPSRNLEAVLKEDREKLKLLQ 1173
>D28114-1|BAA05660.1| 183|Homo sapiens MOBP protein.
Length = 183
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 109 PDWFLNRQKDIVDGKYSQLTSSNLDSKLRED 201
P FLN +K+IVD KYS S K ED
Sbjct: 29 PFTFLNSKKEIVDRKYSICKSGCFYQKKEED 59
>D28113-1|BAA05659.1| 182|Homo sapiens MOBP protein.
Length = 182
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 109 PDWFLNRQKDIVDGKYSQLTSSNLDSKLRED 201
P FLN +K+IVD KYS S K ED
Sbjct: 29 PFTFLNSKKEIVDRKYSICKSGCFYQKKEED 59
>BC119695-1|AAI19696.1| 81|Homo sapiens MOBP protein protein.
Length = 81
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 109 PDWFLNRQKDIVDGKYSQLTSSNLDSKLRED 201
P FLN +K+IVD KYS S K ED
Sbjct: 29 PFTFLNSKKEIVDRKYSICKSGCFYQKKEED 59
>BC119694-1|AAI19695.1| 81|Homo sapiens MOBP protein protein.
Length = 81
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 109 PDWFLNRQKDIVDGKYSQLTSSNLDSKLRED 201
P FLN +K+IVD KYS S K ED
Sbjct: 29 PFTFLNSKKEIVDRKYSICKSGCFYQKKEED 59
>BC075796-1|AAH75796.1| 81|Homo sapiens MOBP protein protein.
Length = 81
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 109 PDWFLNRQKDIVDGKYSQLTSSNLDSKLRED 201
P FLN +K+IVD KYS S K ED
Sbjct: 29 PFTFLNSKKEIVDRKYSICKSGCFYQKKEED 59
>BC022471-1|AAH22471.1| 81|Homo sapiens myelin-associated
oligodendrocyte basic protein protein.
Length = 81
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 109 PDWFLNRQKDIVDGKYSQLTSSNLDSKLRED 201
P FLN +K+IVD KYS S K ED
Sbjct: 29 PFTFLNSKKEIVDRKYSICKSGCFYQKKEED 59
>AC012485-1|AAX88976.1| 1255|Homo sapiens unknown protein.
Length = 1255
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 109 PDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIR 225
P W L D QL S NL++ L+ED E+LK ++
Sbjct: 1135 PIWLLMADADSSVMMTYQLPSRNLEAVLKEDREKLKLLQ 1173
>AB002345-1|BAA20804.2| 1281|Homo sapiens KIAA0347 protein protein.
Length = 1281
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 109 PDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIR 225
P W L D QL S NL++ L+ED E+LK ++
Sbjct: 1161 PIWLLMADADSSVMMTYQLPSRNLEAVLKEDREKLKLLQ 1199
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,532,431
Number of Sequences: 237096
Number of extensions: 887955
Number of successful extensions: 1875
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1875
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -