Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00950
(660 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN full... 163 4e-39
UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93; Eukaryo... 163 4e-39
UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82; Eukaryo... 140 3e-32
UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8; Euteleostomi... 130 3e-29
UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21; Eukaryo... 129 5e-29
UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4; Eukaryot... 126 5e-28
UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19; Eukaryo... 109 4e-23
UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces ... 106 5e-22
UniRef50_UPI000049933B Cluster: conserved hypothetical protein; ... 105 1e-21
UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;... 97 3e-19
UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamb... 84 3e-15
UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitoz... 79 7e-14
UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillard... 77 5e-13
UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whol... 69 1e-10
UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma j... 68 2e-10
UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella... 65 1e-09
UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7; Archaea... 65 2e-09
UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5; Euryarc... 58 2e-07
UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5; Archaea... 54 2e-06
UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole gen... 52 1e-05
UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4; Archaea... 50 5e-05
UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 49 1e-04
UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3; Euryarc... 48 2e-04
UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1; Methano... 48 2e-04
UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2; Thermoprote... 46 6e-04
UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3; Desulfu... 42 0.010
UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5; Methano... 41 0.030
UniRef50_A7F1W3 Cluster: Putative uncharacterized protein; n=1; ... 38 0.16
UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6; Archaea... 38 0.21
UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1; Methano... 38 0.21
UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: ... 37 0.49
UniRef50_UPI0000DB7956 Cluster: PREDICTED: similar to Deformed C... 35 2.0
UniRef50_Q2IEW0 Cluster: Trigger factor; n=3; Cystobacterineae|R... 35 2.0
UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containi... 34 3.5
UniRef50_UPI0000F2B19F Cluster: PREDICTED: hypothetical protein;... 33 6.1
UniRef50_Q8TN82 Cluster: Predicted protein; n=1; Methanosarcina ... 33 6.1
UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium ja... 33 8.0
UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2; Meth... 33 8.0
UniRef50_A5ASW3 Cluster: Putative uncharacterized protein; n=1; ... 33 8.0
UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1; ... 33 8.0
>UniRef50_Q3UA25 Cluster: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence; n=9;
Deuterostomia|Rep: Bone marrow macrophage cDNA, RIKEN
full-length enriched library, clone:I830031J02
product:ribosomal protein S8, full insert sequence - Mus
musculus (Mouse)
Length = 152
Score = 163 bits (395), Expect = 4e-39
Identities = 72/85 (84%), Positives = 77/85 (90%)
Frame = +1
Query: 1 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNF 180
D+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNF
Sbjct: 6 DNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNF 65
Query: 181 SWGSECSTRKTRIIDVVYNASNNEL 255
SWGSEC TRKTRIIDVVYNASNNEL
Sbjct: 66 SWGSECCTRKTRIIDVVYNASNNEL 90
Score = 103 bits (247), Expect = 4e-21
Identities = 45/60 (75%), Positives = 53/60 (88%)
Frame = +3
Query: 252 IVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 431
+VRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 90 LVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKY 149
>UniRef50_P62241 Cluster: 40S ribosomal protein S8; n=93;
Eukaryota|Rep: 40S ribosomal protein S8 - Homo sapiens
(Human)
Length = 208
Score = 163 bits (395), Expect = 4e-39
Identities = 72/85 (84%), Positives = 77/85 (90%)
Frame = +1
Query: 1 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNF 180
D+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGGN KYRALRLD GNF
Sbjct: 6 DNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNF 65
Query: 181 SWGSECSTRKTRIIDVVYNASNNEL 255
SWGSEC TRKTRIIDVVYNASNNEL
Sbjct: 66 SWGSECCTRKTRIIDVVYNASNNEL 90
Score = 130 bits (314), Expect = 3e-29
Identities = 58/86 (67%), Positives = 71/86 (82%)
Frame = +3
Query: 252 IVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 431
+VRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 90 LVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKY 149
Query: 432 LARQRLAKVEGALEEQFHTGRLLACV 509
R++ AK+ LEEQF G+LLAC+
Sbjct: 150 DERKKNAKISSLLEEQFQQGKLLACI 175
Score = 67.3 bits (157), Expect = 3e-10
Identities = 28/33 (84%), Positives = 32/33 (96%)
Frame = +2
Query: 509 ASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 607
ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 176 ASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>UniRef50_Q8MLY8 Cluster: 40S ribosomal protein S8; n=82;
Eukaryota|Rep: 40S ribosomal protein S8 - Drosophila
melanogaster (Fruit fly)
Length = 208
Score = 140 bits (339), Expect = 3e-32
Identities = 65/85 (76%), Positives = 72/85 (84%)
Frame = +1
Query: 1 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNF 180
D HKRRATGGKR +RKKRK+ELGRPAANT+LG R+H VR+RGGNTK RALRL+TGNF
Sbjct: 6 DSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNF 65
Query: 181 SWGSECSTRKTRIIDVVYNASNNEL 255
+W SE RKTRI DVVYNASNNEL
Sbjct: 66 AWASEGVARKTRIADVVYNASNNEL 90
Score = 122 bits (294), Expect = 8e-27
Identities = 55/88 (62%), Positives = 71/88 (80%), Gaps = 2/88 (2%)
Frame = +3
Query: 252 IVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEA--IINKKRSQKTAR 425
+VRTKTLVKN+IVV+DATPFRQWYE+HY LPLGRK+ K + E+ ++ KKRS+K +
Sbjct: 90 LVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNPKHAQKEDENDVLTKKRSEKVMK 149
Query: 426 KYLARQRLAKVEGALEEQFHTGRLLACV 509
KYL RQ+ KVE ALE+QF +GR+LAC+
Sbjct: 150 KYLERQKYGKVEQALEDQFTSGRILACI 177
Score = 64.5 bits (150), Expect = 2e-09
Identities = 27/31 (87%), Positives = 31/31 (100%)
Frame = +2
Query: 509 ASRPGQCGRADGYILEGKELEFYLRKIKSKR 601
+SRPGQCGR+DGYILEGKELEFYL+KIKSK+
Sbjct: 178 SSRPGQCGRSDGYILEGKELEFYLKKIKSKK 208
>UniRef50_Q5JR95 Cluster: Ribosomal protein S8; n=8;
Euteleostomi|Rep: Ribosomal protein S8 - Homo sapiens
(Human)
Length = 188
Score = 130 bits (314), Expect = 3e-29
Identities = 58/86 (67%), Positives = 71/86 (82%)
Frame = +3
Query: 252 IVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 431
+VRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY
Sbjct: 70 LVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKY 129
Query: 432 LARQRLAKVEGALEEQFHTGRLLACV 509
R++ AK+ LEEQF G+LLAC+
Sbjct: 130 DERKKNAKISSLLEEQFQQGKLLACI 155
Score = 102 bits (245), Expect = 7e-21
Identities = 55/85 (64%), Positives = 60/85 (70%)
Frame = +1
Query: 1 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNF 180
D+WHKRR TGGKR P KKRKYELGRPAANT++GP+RIH+VR RGG
Sbjct: 6 DNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGG-------------- 51
Query: 181 SWGSECSTRKTRIIDVVYNASNNEL 255
C TRKTRIIDVVYNASNNEL
Sbjct: 52 -----C-TRKTRIIDVVYNASNNEL 70
Score = 67.3 bits (157), Expect = 3e-10
Identities = 28/33 (84%), Positives = 32/33 (96%)
Frame = +2
Query: 509 ASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 607
ASRPGQCGRADGY+LEGKELEFYLRKIK+++ K
Sbjct: 156 ASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 188
>UniRef50_Q08069 Cluster: 40S ribosomal protein S8; n=21;
Eukaryota|Rep: 40S ribosomal protein S8 - Zea mays
(Maize)
Length = 221
Score = 129 bits (312), Expect = 5e-29
Identities = 62/86 (72%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGN 177
D HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN
Sbjct: 6 DSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGN 65
Query: 178 FSWGSECSTRKTRIIDVVYNASNNEL 255
+SWGSE TRKTRI+DVVYNASNNEL
Sbjct: 66 YSWGSEAVTRKTRILDVVYNASNNEL 91
Score = 79.0 bits (186), Expect = 9e-14
Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 8/94 (8%)
Frame = +3
Query: 252 IVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKKR 407
+VRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A+ E E A K+
Sbjct: 91 LVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVEAAAEETKK 150
Query: 408 SQKTARKYLARQRLAKVEGALEEQFHTGRLLACV 509
S RK R+ ++ +EEQF +GRLLAC+
Sbjct: 151 SNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACI 184
Score = 62.5 bits (145), Expect = 9e-09
Identities = 25/33 (75%), Positives = 31/33 (93%)
Frame = +2
Query: 509 ASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 607
+SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 185 SSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>UniRef50_Q4N3P0 Cluster: 40S ribosomal protein S8; n=4;
Eukaryota|Rep: 40S ribosomal protein S8 - Theileria
parva
Length = 188
Score = 126 bits (304), Expect = 5e-28
Identities = 57/85 (67%), Positives = 70/85 (82%)
Frame = +1
Query: 1 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNF 180
D HKRR TGG+ +KKRKYELGRP++NT+LG + + VR RGGN K+RALRLD+GNF
Sbjct: 6 DSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGSKLVRKVRCRGGNLKFRALRLDSGNF 65
Query: 181 SWGSECSTRKTRIIDVVYNASNNEL 255
SWGS+ TRKTR++DVVYNAS+NEL
Sbjct: 66 SWGSQNVTRKTRVMDVVYNASSNEL 90
Score = 59.7 bits (138), Expect = 6e-08
Identities = 40/86 (46%), Positives = 51/86 (59%)
Frame = +3
Query: 252 IVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 431
+VRTKTLVKNAIV VD TPF+ W+++HY L LG K +E +A S+K A
Sbjct: 90 LVRTKTLVKNAIVTVDPTPFKLWFKTHYGLELG-----KSSEDPQA------SEKVA--- 135
Query: 432 LARQRLAKVEGALEEQFHTGRLLACV 509
A V L +QF +GRLLAC+
Sbjct: 136 ------ALVPRTLLDQFSSGRLLACI 155
Score = 52.4 bits (120), Expect = 9e-06
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +2
Query: 509 ASRPGQCGRADGYILEGKELEFYLRKIKSKR 601
+SRPGQCGR DGY+LEG+EL FY R++ K+
Sbjct: 156 SSRPGQCGRCDGYVLEGEELNFYRRRMDKKK 186
>UniRef50_P25204 Cluster: 40S ribosomal protein S8; n=19;
Eukaryota|Rep: 40S ribosomal protein S8 - Leishmania
major
Length = 220
Score = 109 bits (263), Expect = 4e-23
Identities = 51/82 (62%), Positives = 62/82 (75%)
Frame = +1
Query: 10 HKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWG 189
HKR+ TGGK RK+ K ELGR ANTRLG +R+ VR+RGGN K RALRLDTGNF+W
Sbjct: 9 HKRKITGGKTKIHRKRMKAELGRLPANTRLGARRVSPVRARGGNFKIRALRLDTGNFAWA 68
Query: 190 SECSTRKTRIIDVVYNASNNEL 255
SE + R++DVVYNA++NEL
Sbjct: 69 SEAIAHRVRLLDVVYNATSNEL 90
Score = 65.7 bits (153), Expect = 9e-10
Identities = 42/97 (43%), Positives = 54/97 (55%), Gaps = 13/97 (13%)
Frame = +3
Query: 252 IVRTKTLVKNAIVVVDATPFRQWYESHYTLPL-GRKKGAKLTEAEE--------AIINK- 401
+VRTKTLVKN IV VDA PF++WY HY + L KK K A E A +K
Sbjct: 90 LVRTKTLVKNCIVAVDAAPFKRWYAKHYGIDLDADKKSTKAAVAAEKKGRKSAHAAADKY 149
Query: 402 ---KRSQKTARKYLARQRLAKVEGALEEQFHTGRLLA 503
K S K R++ R+R +VE A+ +Q GR+LA
Sbjct: 150 DVNKASPKLQREWTRRRRNHRVEKAIADQLREGRVLA 186
Score = 48.4 bits (110), Expect = 2e-04
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = +2
Query: 512 SRPGQCGRADGYILEGKELEFYLRKIKSKR 601
SRPGQ GRADG +LEG EL+FYL++++ K+
Sbjct: 190 SRPGQSGRADGILLEGAELQFYLKRLEKKK 219
>UniRef50_A6RAQ0 Cluster: Ribosomal protein S8; n=1; Ajellomyces
capsulatus NAm1|Rep: Ribosomal protein S8 - Ajellomyces
capsulatus NAm1
Length = 141
Score = 106 bits (254), Expect = 5e-22
Identities = 49/76 (64%), Positives = 58/76 (76%)
Frame = +1
Query: 1 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNF 180
D HKR ATG KR+ RKKR +E GR ANTR+GP+RIH VR+RGGN K+R LRL++GNF
Sbjct: 6 DSRHKRSATGAKRSHYRKKRAFEKGRQPANTRIGPKRIHLVRTRGGNQKFRGLRLESGNF 65
Query: 181 SWGSECSTRKTRIIDV 228
SWGSE RK R+I V
Sbjct: 66 SWGSEGIARKVRVIVV 81
Score = 47.2 bits (107), Expect = 3e-04
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +2
Query: 488 GAFAGLRASRPGQCGRADGYILEGKELEFYLRKIK 592
G + +SRPGQ GR DGYILEG+EL FY R I+
Sbjct: 106 GRLYAVVSSRPGQSGRVDGYILEGEELAFYQRAIR 140
>UniRef50_UPI000049933B Cluster: conserved hypothetical protein;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 237
Score = 105 bits (251), Expect = 1e-21
Identities = 49/84 (58%), Positives = 63/84 (75%)
Frame = +1
Query: 1 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNF 180
D HKRRATGGK+ ++KK+K +GR ANTRLG R+H VR R G K RALRL+ GNF
Sbjct: 6 DSRHKRRATGGKKNSMQKKKKNTMGRQPANTRLGAIRVHDVRCRYGIIKRRALRLENGNF 65
Query: 181 SWGSECSTRKTRIIDVVYNASNNE 252
SW S+ T+ T+I++VVYNAS+N+
Sbjct: 66 SWASQSITKGTKILNVVYNASDND 89
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +2
Query: 509 ASRPGQCGRADGYILEGKELEFYLRKIKSKR 601
+SRPGQ G +GYILEGKEL+FY +KI K+
Sbjct: 206 SSRPGQTGSVEGYILEGKELDFYSKKISDKK 236
Score = 38.7 bits (86), Expect = 0.12
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = +3
Query: 255 VRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKK----RSQKTA 422
VRT TLVK AI+ +D PFR W+ Y + K E+ KK + ++
Sbjct: 91 VRTNTLVKGAIIEIDPAPFRLWFLKFYGKDIASTDYYKSLESATFKTEKKVVVPKEEENK 150
Query: 423 RKYLARQRLAKVEGAL 470
K +A Q++A+ + AL
Sbjct: 151 EKTIA-QQIAETQVAL 165
>UniRef50_Q6QP50 Cluster: Putative 40S ribosomal protein S8; n=1;
Zea mays|Rep: Putative 40S ribosomal protein S8 - Zea
mays (Maize)
Length = 245
Score = 97.1 bits (231), Expect = 3e-19
Identities = 46/76 (60%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Frame = +1
Query: 31 GKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWGSECSTR 207
G P+++++ YELGR ANT+L + + VR RGGNTK+RALR DT N+SWGSE TR
Sbjct: 113 GPFCPLQEEQGYELGRQPANTKLSSNKTVRRVRVRGGNTKWRALRFDTCNYSWGSEALTR 172
Query: 208 KTRIIDVVYNASNNEL 255
KTRI+DVVY A+NNEL
Sbjct: 173 KTRILDVVYIATNNEL 188
Score = 58.4 bits (135), Expect = 1e-07
Identities = 24/45 (53%), Positives = 35/45 (77%)
Frame = +3
Query: 252 IVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 386
+VRT+TLVK+AIV VDA PF+QWY +HY + +GRKK + + ++
Sbjct: 188 LVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKVSVAKKDD 232
>UniRef50_Q7R1W8 Cluster: Ribosomal protein S8; n=1; Giardia lamblia
ATCC 50803|Rep: Ribosomal protein S8 - Giardia lamblia
ATCC 50803
Length = 174
Score = 83.8 bits (198), Expect = 3e-15
Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 9/94 (9%)
Frame = +1
Query: 1 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRL---------GPQRIHSVRSRGGNTKYR 153
D +KR TG + KKRKY LGR ANT+L Q+I ++R RGGN K R
Sbjct: 6 DKMYKRSKTGAVQGKWHKKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGGNIKRR 65
Query: 154 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNEL 255
ALRL G+F+WGS + K RI+ VVYN+++NEL
Sbjct: 66 ALRLSHGSFAWGSADISHKARILQVVYNSTSNEL 99
Score = 45.2 bits (102), Expect = 0.001
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +2
Query: 509 ASRPGQCGRADGYILEGKELEFYLRKIKSK 598
+SRPGQ G ADGYILEG EL FY +K+ K
Sbjct: 145 SSRPGQVGTADGYILEGPELLFYQKKLAPK 174
>UniRef50_Q8SWC9 Cluster: Ribosomal protein S8; n=1; Encephalitozoon
cuniculi|Rep: Ribosomal protein S8 - Encephalitozoon
cuniculi
Length = 173
Score = 79.4 bits (187), Expect = 7e-14
Identities = 38/90 (42%), Positives = 56/90 (62%)
Frame = +1
Query: 10 HKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWG 189
HKRR TG K RKKR G ++T++G +++ VR RGGN KY+ALRLD G+F +
Sbjct: 9 HKRRKTGAKAVISRKKRNNRAGSQPSSTKIGERKVTPVRVRGGNRKYKALRLDMGHFKFI 68
Query: 190 SECSTRKTRIIDVVYNASNNELCVQRPLSR 279
+ R +++ VVY+ S+NEL L++
Sbjct: 69 TTGKFRMAKLLQVVYHPSSNELVRTNTLTK 98
Score = 39.5 bits (88), Expect = 0.070
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +2
Query: 488 GAFAGLRASRPGQCGRADGYILEGKELEFYLRKIKSK 598
G + SRPGQ G A G++L+G EL+FY K K
Sbjct: 131 GHLYAIITSRPGQVGMAQGHVLQGDELKFYADKFNKK 167
>UniRef50_Q9AW20 Cluster: 40S ribosomal protein S8; n=1; Guillardia
theta|Rep: 40S ribosomal protein S8 - Guillardia theta
(Cryptomonas phi)
Length = 178
Score = 76.6 bits (180), Expect = 5e-13
Identities = 39/90 (43%), Positives = 57/90 (63%)
Frame = +1
Query: 10 HKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWG 189
HKR++TGG ++ RKKR + GR +NT++G + + +R RGG K RAL L GNFS+
Sbjct: 9 HKRKSTGGLKSCWRKKRNHAKGRQPSNTKIGRRCVVKLRVRGGGVKTRALFLSYGNFSFV 68
Query: 190 SECSTRKTRIIDVVYNASNNELCVQRPLSR 279
S T K +I+ V +N S+NEL L++
Sbjct: 69 SIQRTFKAKILSVAFNESSNELVRTNTLTK 98
Score = 51.6 bits (118), Expect = 2e-05
Identities = 21/29 (72%), Positives = 27/29 (93%)
Frame = +2
Query: 512 SRPGQCGRADGYILEGKELEFYLRKIKSK 598
SRPGQ GRADGYILEG+EL+++L+KI+ K
Sbjct: 150 SRPGQSGRADGYILEGQELDYFLKKIQKK 178
>UniRef50_Q4SV68 Cluster: Chromosome undetermined SCAF13783, whole
genome shotgun sequence; n=2; Coelomata|Rep: Chromosome
undetermined SCAF13783, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 149
Score = 68.9 bits (161), Expect = 1e-10
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = +2
Query: 509 ASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 607
ASRPGQCGRADGYILEGKELEFYLRKIK+K+ K
Sbjct: 117 ASRPGQCGRADGYILEGKELEFYLRKIKAKKGK 149
>UniRef50_Q5C1R4 Cluster: SJCHGC03085 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03085 protein - Schistosoma
japonicum (Blood fluke)
Length = 120
Score = 67.7 bits (158), Expect = 2e-10
Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 9/87 (10%)
Frame = +3
Query: 276 KNAIVVVDATPFRQWYESHYTLPLGR-----KKGAKLT--EAEEAIINKKRSQKTARKYL 434
K+AIV + PFRQW+E+ Y LG KKG +T EE + KKRS+ +K+
Sbjct: 1 KSAIVQIGGAPFRQWFEAPYLKELGPPKVVCKKGPSVTPENPEEDFLLKKRSKSALKKFE 60
Query: 435 ARQRL--AKVEGALEEQFHTGRLLACV 509
RQ L A VE +L+E+F TGRLLAC+
Sbjct: 61 TRQALPQANVEESLKEEFVTGRLLACI 87
Score = 55.6 bits (128), Expect = 1e-06
Identities = 22/33 (66%), Positives = 30/33 (90%)
Frame = +2
Query: 509 ASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 607
+S+PGQ GRADGY+ EGKELEF+ +K+K+K+AK
Sbjct: 88 SSKPGQVGRADGYLFEGKELEFFSKKLKAKKAK 120
>UniRef50_Q3LVX9 Cluster: Ribosomal protein S8; n=1; Bigelowiella
natans|Rep: Ribosomal protein S8 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 176
Score = 65.3 bits (152), Expect = 1e-09
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +1
Query: 13 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGNFSWG 189
K++ TGGK+ I KK+ + G NT L I R RGGN K++A+ L G+F W
Sbjct: 3 KKKLTGGKKKKISKKKNHSKGNNPTNTVLRRANFIKMTRVRGGNFKFKAISLGKGSFQWK 62
Query: 190 SECSTRKTRIIDVVYNASNNELCVQRPLSR 279
+ ++ ++I+ V+YN +N +L +R LS+
Sbjct: 63 TMQLSKNSKILSVLYNQANLKLVQKRNLSK 92
>UniRef50_Q6L0D3 Cluster: 30S ribosomal protein S8e; n=7;
Archaea|Rep: 30S ribosomal protein S8e - Picrophilus
torridus
Length = 125
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/77 (41%), Positives = 46/77 (59%)
Frame = +1
Query: 16 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 195
R+ +GGK P KR+YELGR TRLG + + +RS GGN+K+ LR D N +
Sbjct: 10 RKPSGGKLRPNHSKRRYELGREPTLTRLGDRELRKIRSYGGNSKFALLRCDYANVYNPKD 69
Query: 196 CSTRKTRIIDVVYNASN 246
+TRK +I V N+++
Sbjct: 70 KTTRKVKINTVKENSAD 86
>UniRef50_Q9HJD0 Cluster: 30S ribosomal protein S8e; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Thermoplasma acidophilum
Length = 127
Score = 57.6 bits (133), Expect = 2e-07
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +1
Query: 16 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWGS 192
++ATGG RKKR++ELGR T+LG + V R+ GGNTK +T N S
Sbjct: 10 KKATGGSLKQSRKKRRFELGREPTLTKLGTKTERKVIRTMGGNTKVILFTAETANVYDAS 69
Query: 193 ECSTRKTRIIDVVYNASNNELCVQR 267
E +K +II V N +N+ VQR
Sbjct: 70 EKKIKKAKIITVKANPANSHY-VQR 93
>UniRef50_A3CSQ2 Cluster: 30S ribosomal protein S8e; n=5;
Archaea|Rep: 30S ribosomal protein S8e - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 125
Score = 54.4 bits (125), Expect = 2e-06
Identities = 29/77 (37%), Positives = 46/77 (59%)
Frame = +1
Query: 16 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 195
R+ +GG+ + K++ E+GR A T +G +R VR+ GGN K RALRL+ S +
Sbjct: 9 RKPSGGRYHTSQGKKRTEIGRAPAETHIGEERRRIVRTFGGNQKVRALRLEYATVSNPAT 68
Query: 196 CSTRKTRIIDVVYNASN 246
T+KT+I V N+++
Sbjct: 69 GETKKTKIEAVEANSAD 85
>UniRef50_A7Q5T2 Cluster: Chromosome chr14 scaffold_54, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr14 scaffold_54, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 110
Score = 52.0 bits (119), Expect = 1e-05
Identities = 34/86 (39%), Positives = 49/86 (56%)
Frame = +3
Query: 252 IVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 431
+VRT+TLVKNAI+ Q Y HY L +G KK A T ++ +++ RK
Sbjct: 32 LVRTQTLVKNAII--------QRYLQHYGLDIGCKKKASTTPRKK----ERKGNHVVRKL 79
Query: 432 LARQRLAKVEGALEEQFHTGRLLACV 509
RQ+ K++ +EEQF +GRLLA +
Sbjct: 80 EKRQQDHKLDPHIEEQFGSGRLLAAI 105
>UniRef50_Q980W3 Cluster: 30S ribosomal protein S8e; n=4;
Archaea|Rep: 30S ribosomal protein S8e - Sulfolobus
solfataricus
Length = 133
Score = 50.0 bits (114), Expect = 5e-05
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = +1
Query: 16 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH-SVRSRGGNTKYRALRLDTGNFSWGS 192
R+ TGG + R KRKYE+G P T L + I R+ GGN K R T N +
Sbjct: 10 RKITGGLKGKHRDKRKYEIGNPPTFTTLSAEDIRIKDRTLGGNFKVRLKYTTTANVLDPA 69
Query: 193 ECSTRKTRIIDVVYNASNNEL 255
+ +K +I++++ +N EL
Sbjct: 70 TNTAKKVKILEILETPANKEL 90
>UniRef50_O58830 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrococcus
horikoshii
Length = 127
Score = 48.8 bits (111), Expect = 1e-04
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +1
Query: 16 RRATGGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWGS 192
++ +GG+ RKKRK ELGR +NTR+ Q + +R+ GGN K R N +
Sbjct: 10 KKPSGGRIVLARKKRKRELGREPSNTRVAEQDKRKIIRTYGGNRKVRLTAAAYANV-FDK 68
Query: 193 ECSTRKTRIIDVVYNASNNE 252
RK RII V+ N +N +
Sbjct: 69 SGKGRKVRIIRVLENPANRQ 88
>UniRef50_Q0W1L5 Cluster: 30S ribosomal protein S8e; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S8e -
Uncultured methanogenic archaeon RC-I
Length = 125
Score = 48.4 bits (110), Expect = 2e-04
Identities = 26/77 (33%), Positives = 40/77 (51%)
Frame = +1
Query: 16 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 195
R+ATGG+ R KRK+ELGR +G Q++ + G +K R L+ D N +
Sbjct: 9 RKATGGRLRLNRSKRKFELGRDFTIPVIGAQKLKVLNVTGNGSKVRVLKSDVVNVTDPKT 68
Query: 196 CSTRKTRIIDVVYNASN 246
T+K ++ V N +N
Sbjct: 69 GKTQKVKMTTVTENPAN 85
>UniRef50_Q8TV55 Cluster: 30S ribosomal protein S8e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S8e -
Methanopyrus kandleri
Length = 133
Score = 48.0 bits (109), Expect = 2e-04
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Frame = +1
Query: 7 WHKR---RATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDT- 171
WH R + TGG+ P RKKRK+E+G P T +G +R + R GGN K + L+ T
Sbjct: 4 WHGRSLRKPTGGRIRPHRKKRKFEMGNPPTETLVGEERKLKERRGMGGNVK-KGLKFATH 62
Query: 172 GNFSWGSECSTRKTRIIDVVYNASN 246
N + + RI +VV N ++
Sbjct: 63 ANVADPETGEVKCVRIEEVVKNPAS 87
>UniRef50_A0RXG5 Cluster: Ribosomal protein S8E; n=2;
Thermoprotei|Rep: Ribosomal protein S8E - Cenarchaeum
symbiosum
Length = 129
Score = 46.4 bits (105), Expect = 6e-04
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +1
Query: 19 RATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSEC 198
+ TGG+R P+R +RKYE+ R G Q + + RG TK +D N +
Sbjct: 12 KLTGGRRHPLRTRRKYEIDRYPNEALSGAQETVTRKVRGKRTKTALKTIDFVNLA-VQGA 70
Query: 199 STRKTRIIDVVYNASNNE 252
+K++I+ V+ N +NN+
Sbjct: 71 KVKKSKIVKVLENPTNND 88
>UniRef50_Q9YDY0 Cluster: 30S ribosomal protein S8e; n=3;
Desulfurococcales|Rep: 30S ribosomal protein S8e -
Aeropyrum pernix
Length = 136
Score = 42.3 bits (95), Expect = 0.010
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 13 KRRATGGKRAPIRK-KRKYELGRPAANTRLG---PQRIHSVRSRGGNTKYRALRLDTGNF 180
K++ +GGKR K KRKY GRP T L + VR+RGG+ K +A ++
Sbjct: 9 KKKPSGGKRRYYYKVKRKYAAGRPPTYTTLSAAEEEERKPVRARGGSYKIKAKKVAFAVV 68
Query: 181 SWGSECSTRKTRIIDVVYNASNNE 252
S RK RI+ +V ++ E
Sbjct: 69 SNPKTGEARKARILRIVETPAHRE 92
>UniRef50_P61300 Cluster: 30S ribosomal protein S8e; n=5;
Methanococcus|Rep: 30S ribosomal protein S8e -
Methanococcus maripaludis
Length = 128
Score = 40.7 bits (91), Expect = 0.030
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +1
Query: 13 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQ-RIHSVRSRGGNTKYRALRLDTGNFSWG 189
+R +TG K KK K E+GRPAA T++ + + VR RG N K + + + N
Sbjct: 9 RRLSTGAKVWRAAKKHKREMGRPAAETQVSDKIKRKIVRCRGANLKVKLEKTNYANVFDQ 68
Query: 190 SECSTRKTRIIDVVYNASN 246
+ +K + +V+ N +N
Sbjct: 69 ANKVCKKVVVTNVIDNKAN 87
>UniRef50_A7F1W3 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 622
Score = 38.3 bits (85), Expect = 0.16
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -2
Query: 275 DKGLCTHNSLLDALYTTSMIRVLRVEHSDPQEKLPVS 165
D GL +N L D +Y T I +R EH DP++ LP S
Sbjct: 302 DLGLADYNLLFDTIYATPPIARVRSEHEDPRDNLPDS 338
>UniRef50_Q8ZTB8 Cluster: 30S ribosomal protein S8e; n=6;
Archaea|Rep: 30S ribosomal protein S8e - Pyrobaculum
aerophilum
Length = 131
Score = 37.9 bits (84), Expect = 0.21
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +1
Query: 16 RRATGGKRAPIRKKRKYEL-GRPAANTRLGPQRIHSV-RSRGGNTKYRALRLDTGNFSWG 189
++ +GGK+ +RK +K L G P +LG V R RGGN K R N
Sbjct: 13 KKPSGGKKRKVRKTKKKALGGGPPQIPKLGENDTRIVERVRGGNLKVRLREAKFANVYIP 72
Query: 190 SECSTRKTRIIDVVYNASN 246
E + K +II ++ +N
Sbjct: 73 KERKSVKAKIISIISTPAN 91
>UniRef50_Q2NEU6 Cluster: 30S ribosomal protein S8e; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: 30S ribosomal
protein S8e - Methanosphaera stadtmanae (strain DSM
3091)
Length = 126
Score = 37.9 bits (84), Expect = 0.21
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +1
Query: 16 RRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSE 195
R+ +G + + KR E GR A TR+G + + +RG TK RA N +
Sbjct: 10 RKPSGARSRRNKNKRNAEFGRNPAETRIGDEVKKEIVARGNCTKTRATVAKRINVIDPKD 69
Query: 196 CSTRKTRIIDVVYNASNN 249
S++ ++ V+ N +N+
Sbjct: 70 NSSKNVEMLTVLENGANS 87
>UniRef50_Q2W531 Cluster: TPR repeat; n=3; Magnetospirillum|Rep: TPR
repeat - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 556
Score = 36.7 bits (81), Expect = 0.49
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +1
Query: 22 ATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSR 132
A G +RAP K YE R AA TRL P + ++R R
Sbjct: 268 ALGAERAPANLKANYEKERDAAGTRLSPAELEALRGR 304
>UniRef50_UPI0000DB7956 Cluster: PREDICTED: similar to Deformed
CG2189-PA; n=1; Apis mellifera|Rep: PREDICTED: similar
to Deformed CG2189-PA - Apis mellifera
Length = 284
Score = 34.7 bits (76), Expect = 2.0
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +2
Query: 2 ITGISEGPPVGNVRPYARRGSMS*GVPLQTPGSVLSVSTPFVHVVEILS 148
+TG+ EGPP G + GS+S P +P + L VS P +H I S
Sbjct: 230 VTGMMEGPPGGGPLGHIASGSISPLAPATSPSATLQVSAP-IHPPPIKS 277
>UniRef50_Q2IEW0 Cluster: Trigger factor; n=3; Cystobacterineae|Rep:
Trigger factor - Anaeromyxobacter dehalogenans (strain
2CP-C)
Length = 429
Score = 34.7 bits (76), Expect = 2.0
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = +3
Query: 405 RSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVRVAQVSVVAP 539
R K RK L RQ A+VEG + E+ T VRV + VVAP
Sbjct: 45 RPGKAPRKVLERQFKAEVEGEVAERIVTETFTEAVRVESLPVVAP 89
>UniRef50_UPI0000F32D0C Cluster: Zinc finger CCCH domain-containing
protein 6.; n=1; Bos taurus|Rep: Zinc finger CCCH
domain-containing protein 6. - Bos Taurus
Length = 770
Score = 33.9 bits (74), Expect = 3.5
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +2
Query: 14 SEGPPVGNVRPYARRGSMS*GVPLQTPGSVLS 109
S GP G + PYA + S S G+PL TPGSVLS
Sbjct: 600 SSGP--GALPPYAPKLSSSTGLPLGTPGSVLS 629
>UniRef50_UPI0000F2B19F Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 161
Score = 33.1 bits (72), Expect = 6.1
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 372 TEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQF 482
T EE I+NKK S+K +KY ++ AK+ L E F
Sbjct: 105 TPEEEEILNKKHSKKIQKKYEEWKKKAKISLLLREHF 141
>UniRef50_Q8TN82 Cluster: Predicted protein; n=1; Methanosarcina
acetivorans|Rep: Predicted protein - Methanosarcina
acetivorans
Length = 90
Score = 33.1 bits (72), Expect = 6.1
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 321 YESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTA-RKYLARQRLAKVEGALEE 476
Y + +TL R + A EA E ++ K +K A K LA+ L K+EG LEE
Sbjct: 31 YRNIWTLNGSRNRSATSKEACEKLLAKNCLRKIACEKLLAKNCLRKIEGLLEE 83
>UniRef50_Q89D60 Cluster: Blr7583 protein; n=1; Bradyrhizobium
japonicum|Rep: Blr7583 protein - Bradyrhizobium
japonicum
Length = 261
Score = 32.7 bits (71), Expect = 8.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 285 IVVVDATPFRQWYESHYTLPLGRKK 359
++ +D PFR+W + TLPLG K
Sbjct: 22 VIAIDGDPFREWQRTSRTLPLGEVK 46
>UniRef50_A7D873 Cluster: Exodeoxyribonuclease III Xth; n=2;
Methylobacterium extorquens PA1|Rep:
Exodeoxyribonuclease III Xth - Methylobacterium
extorquens PA1
Length = 344
Score = 32.7 bits (71), Expect = 8.0
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 19 RATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL-DTGNFSWGSE 195
R G+R P+R++ + E RP A+ R P H+ R+R G R L + + F + S
Sbjct: 7 RGLAGRRGPLRRRGRRERLRPLADDR-RPALRHAARARPGGGGGRGLTVCEARRFRYRSG 65
Query: 196 CSTRKTRIIDV 228
S ++ I V
Sbjct: 66 SSRHASQAIPV 76
>UniRef50_A5ASW3 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 738
Score = 32.7 bits (71), Expect = 8.0
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +3
Query: 351 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACVRVAQVSV 530
+K+G K E I + RK RQ+ K++ +EEQF +GRLLA + V+V
Sbjct: 273 KKEGEKGDGPVEEI---NKGNHVVRKLEKRQQDHKLDPHIEEQFGSGRLLAAISSYPVNV 329
Query: 531 V 533
V
Sbjct: 330 V 330
>UniRef50_A5E7M6 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 620
Score = 32.7 bits (71), Expect = 8.0
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 300 ATPFRQWYESHYTLPLGRKKGAKLTEAE 383
ATPF Q + +HY L RKKG K+ E E
Sbjct: 374 ATPFYQTFLAHYIWQLKRKKGKKMKEDE 401
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,699,198
Number of Sequences: 1657284
Number of extensions: 11808157
Number of successful extensions: 34207
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 32953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34177
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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