Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00950
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   130   2e-31
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   130   2e-31
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    28   1.4  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   1.8  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   1.8  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    27   2.4  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   5.5  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   7.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.7  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  130 bits (314), Expect = 2e-31
 Identities = 61/93 (65%), Positives = 72/93 (77%)
 Frame = +1

Query: 1   DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNF 180
           D  HKR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNF
Sbjct: 6   DSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNF 65

Query: 181 SWGSECSTRKTRIIDVVYNASNNELCVQRPLSR 279
           SWGSE  ++KTRII V Y+ SNNEL     L++
Sbjct: 66  SWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTK 98



 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 41/86 (47%), Positives = 52/86 (60%)
 Frame = +3

Query: 252 IVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 431
           +VRT TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S+   RK+
Sbjct: 90  LVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKH 143

Query: 432 LARQRLAKVEGALEEQFHTGRLLACV 509
            AR   +KV+ ALE QF  GRL A V
Sbjct: 144 SARLGDSKVDSALETQFAAGRLYAVV 169



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +2

Query: 488 GAFAGLRASRPGQCGRADGYILEGKELEFYLRKIKSKR 601
           G    + +SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  130 bits (314), Expect = 2e-31
 Identities = 61/93 (65%), Positives = 72/93 (77%)
 Frame = +1

Query: 1   DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNF 180
           D  HKR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD+GNF
Sbjct: 6   DSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDSGNF 65

Query: 181 SWGSECSTRKTRIIDVVYNASNNELCVQRPLSR 279
           SWGSE  ++KTRII V Y+ SNNEL     L++
Sbjct: 66  SWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTK 98



 Score = 72.1 bits (169), Expect = 6e-14
 Identities = 41/86 (47%), Positives = 52/86 (60%)
 Frame = +3

Query: 252 IVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 431
           +VRT TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S+   RK+
Sbjct: 90  LVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKH 143

Query: 432 LARQRLAKVEGALEEQFHTGRLLACV 509
            AR   +KV+ ALE QF  GRL A V
Sbjct: 144 SARLGDSKVDSALETQFAAGRLYAVV 169



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +2

Query: 488 GAFAGLRASRPGQCGRADGYILEGKELEFYLRKIKSKR 601
           G    + +SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 1   DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALR 162
           + W K   T  K+    +KRK  L R A   RL  + + S+ S+GG    +A +
Sbjct: 32  EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAK 84


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/71 (22%), Positives = 33/71 (46%)
 Frame = +3

Query: 300 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ 479
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+ 
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIEDA 813

Query: 480 FHTGRLLACVR 512
                +LA ++
Sbjct: 814 TDPQTILAILK 824


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +1

Query: 67   ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASN 246
            EL    +N  +  Q+   + S    T YRA+ LDTG+     E +  K RI   +     
Sbjct: 1108 ELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDLMAVKEVALHKPRISRPMIKRIK 1167

Query: 247  NELCV 261
             E+ V
Sbjct: 1168 GEMLV 1172


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
 Frame = +1

Query: 1    DHWHKRRATGGKRAPIRKKRKY-----ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRL 165
            D W   +A G   +PIR+ ++Y     +  +PA   R      H    R    K R + +
Sbjct: 758  DEWKASKAFGANDSPIRENKRYKHNKLQTPKPADKFR---DNYHKQNKRNREAKERGIGI 814

Query: 166  DTGNFSWGSECSTRKTRIIDVVYNASNN 249
               N    S    RK R +     A NN
Sbjct: 815  KV-NSELKSAVEIRKARELKEKRLAKNN 841


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = -3

Query: 547 VTIGATTLTWAT--RTQA----SKRPVWNCSSRAPS 458
           V  G+ T  W T  RT A    SK P WN  SR P+
Sbjct: 821 VANGSRTPAWNTGSRTPAWNSGSKTPAWNSGSRTPA 856


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 245 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 159
           L+ + T S  +V R  H DP  KLP  RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 92  PGSVLSVSTPFVHVVEILSTVRCVWTPVTSLG 187
           P  VLS   P++  +  L +  C+W P   LG
Sbjct: 682 PILVLSTMKPYLCNITFLGSHLCIWQPKILLG 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,145
Number of Sequences: 5004
Number of extensions: 47658
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)