Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00950
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 129 2e-30
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 129 2e-30
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.27
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 2.5
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 4.3
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 5.7
04_03_0549 - 17043135-17043351,17043641-17043846 28 5.7
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 5.7
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 129 bits (312), Expect = 2e-30
Identities = 62/86 (72%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGN 177
D HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN
Sbjct: 6 DSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGN 65
Query: 178 FSWGSECSTRKTRIIDVVYNASNNEL 255
+SWGSE TRKTRI+DVVYNASNNEL
Sbjct: 66 YSWGSEAVTRKTRILDVVYNASNNEL 91
Score = 67.7 bits (158), Expect = 8e-12
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 25/111 (22%)
Frame = +3
Query: 252 IVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGA---------------------- 365
+VRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A
Sbjct: 91 LVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHALGKIRCLFIGLY 150
Query: 366 ---KLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGRLLACV 509
K +AE K+S RK RQ+ ++ +EEQF +GRLLAC+
Sbjct: 151 VMLKGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACI 201
Score = 62.5 bits (145), Expect = 3e-10
Identities = 25/33 (75%), Positives = 31/33 (93%)
Frame = +2
Query: 509 ASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 607
+SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 202 SSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 129 bits (311), Expect = 2e-30
Identities = 62/86 (72%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRLDTGN 177
D HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRLDTGN
Sbjct: 6 DSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTGN 65
Query: 178 FSWGSECSTRKTRIIDVVYNASNNEL 255
+SWGSE TRKTRI+DVVYNASNNEL
Sbjct: 66 YSWGSEAVTRKTRILDVVYNASNNEL 91
Score = 83.0 bits (196), Expect = 2e-16
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 8/94 (8%)
Frame = +3
Query: 252 IVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKKR 407
+VRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A+ E E A K+
Sbjct: 91 LVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKK 150
Query: 408 SQKTARKYLARQRLAKVEGALEEQFHTGRLLACV 509
S RK RQ+ ++ +EEQF +GRLLAC+
Sbjct: 151 SNHVVRKLEKRQQTRTLDSHIEEQFGSGRLLACI 184
Score = 62.5 bits (145), Expect = 3e-10
Identities = 25/33 (75%), Positives = 31/33 (93%)
Frame = +2
Query: 509 ASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 607
+SRPGQCGRADGYILEGKELEFY++K++ K+ K
Sbjct: 185 SSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +1
Query: 58 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 192
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 13 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 162
KRR GG+RA R+K + E GR A R G R R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 13 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 147
KRR GG+RA R+K + E GR A R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 13 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 147
+RR GG+RA R+K + E GR A R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 95 GSVLSVSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 253
G + P + VV + + C+W + SLG R Q++K + L ++ + +N
Sbjct: 270 GHQMVTINPLLSVVAA-TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 357 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT-GRLLACVRVAQVSVV 533
KG+KL + E + + R++ A R LA GAL + H+ L + + Q+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHSMAAPLHRLLLLQLQAS 63
Query: 534 APMVT 548
+P +T
Sbjct: 64 SPQLT 68
>04_03_0549 - 17043135-17043351,17043641-17043846
Length = 140
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = -2
Query: 335 IMRLIPLPEWSCIYYNNCILDKGLCTHNSLLDALYTTSMIRVLRVEHSDPQEKLPVSRRS 156
++ L+ +P+WS +YY N +DK L S++ A + R ++ + KL + +
Sbjct: 72 LILLLLVPKWSIVYYLNSKIDKKLYNW-SMIGAALNDAWNRYVQKDRRHKAGKLKLGHK- 129
Query: 155 ARYLVFPPRER 123
+ FP R++
Sbjct: 130 ---IDFPVRQQ 137
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 197 VQLAKPVSLMLCIMHLTMNCAYKDPCQECNC-CSR 298
+ L++P I+ L A+ +PC+ECN C R
Sbjct: 549 IPLSQPEGDQSAILSLASASAFAEPCEECNLPCQR 583
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,011,752
Number of Sequences: 37544
Number of extensions: 345338
Number of successful extensions: 1086
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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