Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00950
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 129 2e-30
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 30 1.7
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 30 1.7
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 30 1.7
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 30 1.7
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 30 1.7
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 30 1.7
Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical pr... 28 5.1
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 28 6.8
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 129 bits (311), Expect = 2e-30
Identities = 57/85 (67%), Positives = 68/85 (80%)
Frame = +1
Query: 1 DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNF 180
D WHKR TG + KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRLD+GNF
Sbjct: 6 DSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNF 65
Query: 181 SWGSECSTRKTRIIDVVYNASNNEL 255
SW SE +TRKTRI+D +YNA+NNEL
Sbjct: 66 SWASEQTTRKTRIVDTMYNATNNEL 90
Score = 120 bits (289), Expect = 9e-28
Identities = 56/84 (66%), Positives = 66/84 (78%)
Frame = +3
Query: 252 IVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKY 431
+VRTKTLVK AI+ VDA PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS T +KY
Sbjct: 90 LVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKY 149
Query: 432 LARQRLAKVEGALEEQFHTGRLLA 503
RQ+ A V+ L EQF+TGRLLA
Sbjct: 150 TERQKTAAVDALLIEQFNTGRLLA 173
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/33 (72%), Positives = 31/33 (93%)
Frame = +2
Query: 509 ASRPGQCGRADGYILEGKELEFYLRKIKSKRAK 607
+S PGQ G+A+GYILEGKEL+FYLRKI++K+AK
Sbjct: 176 SSSPGQVGQANGYILEGKELDFYLRKIRAKKAK 208
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 154 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNEL 255
A+++D G+F+WGS+ RK + D+ +N +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQL 644
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 154 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNEL 255
A+++D G+F+WGS+ RK + D+ +N +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQL 644
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 154 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNEL 255
A+++D G+F+WGS+ RK + D+ +N +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQL 644
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 154 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNEL 255
A+++D G+F+WGS+ RK + D+ +N +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQL 644
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 154 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNEL 255
A+++D G+F+WGS+ RK + D+ +N +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQL 644
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 154 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNEL 255
A+++D G+F+WGS+ RK + D+ +N +L
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQL 644
>Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical
protein F46B3.2 protein.
Length = 190
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 323 IPLPEW-SCIYYNNCILDKGLCTHNSLLDALYTTS 222
I + +W +C ++ NC L GLCT N A T++
Sbjct: 107 ICVDQWDNCPFFKNCPLSCGLCTGNVTTPATTTST 141
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +3
Query: 351 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 476
+K G A++ I K+++ KTA+KY +++LA++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,031,962
Number of Sequences: 27780
Number of extensions: 282643
Number of successful extensions: 912
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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