Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00949
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 111 1e-25
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 58 2e-09
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 41 2e-04
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 35 0.014
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 31 0.17
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 29 0.52
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch... 29 0.91
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 28 1.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 6.4
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 6.4
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.5
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 25 8.5
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 111 bits (266), Expect = 1e-25
Identities = 48/84 (57%), Positives = 64/84 (76%)
Frame = +2
Query: 2 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 181
+LGADTRAT +++DKNC+K+H ++ N++C GAGTAADTE T ++S +EL L+T R
Sbjct: 48 VLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNR 107
Query: 182 TVPVETAATLLKRMLFRYQGHIGA 253
V TA T+LK+ LFRYQGHIGA
Sbjct: 108 KPRVVTALTMLKQHLFRYQGHIGA 131
Score = 104 bits (250), Expect = 1e-23
Identities = 49/81 (60%), Positives = 60/81 (74%)
Frame = +1
Query: 256 LVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRD 435
LVLGG D GPH++ I HGS DKLPY +GSGSLAA++V E ++ D+ E +LV++
Sbjct: 133 LVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKE 192
Query: 436 AIAAGIFNDLGSGSNVDLCVI 498
AI AGIFNDLGSGSN DL VI
Sbjct: 193 AIEAGIFNDLGSGSNCDLVVI 213
Score = 32.3 bits (70), Expect = 0.074
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 525 RTYEEANVKGKKQGSYRYALGTTAVLKQRV 614
R Y + N + KQ Y Y GTTAVLK+ +
Sbjct: 222 RGYSKPNERATKQSKYTYDRGTTAVLKEDI 251
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 57.6 bits (133), Expect = 2e-09
Identities = 27/84 (32%), Positives = 45/84 (53%)
Frame = +2
Query: 2 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 181
IL AD+R T ++++ K+ L N++CC +G+AADT+ + L + R+ G
Sbjct: 37 ILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGH 96
Query: 182 TVPVETAATLLKRMLFRYQGHIGA 253
V TAATL M ++ + + A
Sbjct: 97 DPSVHTAATLASEMCYQNKNMLSA 120
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/88 (28%), Positives = 46/88 (52%)
Frame = +1
Query: 250 GCLVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLV 429
G +V G ++TG +Y I GS+ K P A GSGS +A ++ +M +EE + +
Sbjct: 121 GLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFL 180
Query: 430 RDAIAAGIFNDLGSGSNVDLCVIRNTAL 513
++A+A + D SG + + ++ +
Sbjct: 181 KNAVALAMERDGSSGGTIRMVILNKDGM 208
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 40.7 bits (91), Expect = 2e-04
Identities = 25/89 (28%), Positives = 42/89 (47%)
Frame = +1
Query: 232 LSRSYRGCLVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEE 411
+SR + L++ G+D GP +Y P G+ + +GSGS A + + +DM E
Sbjct: 134 MSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLE 193
Query: 412 EGKKLVRDAIAAGIFNDLGSGSNVDLCVI 498
E + L+ + + L S NV L +
Sbjct: 194 EAEVLILKVLRQVMEEKLDS-KNVQLAKV 221
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 34.7 bits (76), Expect = 0.014
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 ILGADTRATENTVVSDKNCQKIHYLASNMYCCG--AGTAADTEMTTQSVASQLELQRLHT 175
++ D+RA+ +++ + +K+ + N Y G AG AAD + + + L +L
Sbjct: 74 VVCVDSRASAGPLIASQTVKKV--IEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRN 131
Query: 176 GRTVPVETAATLLKRMLFRYQGH 244
+ V A+ +L + + Y+G+
Sbjct: 132 KELISVSAASKILSNITYSYKGY 154
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 31.1 bits (67), Expect = 0.17
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +1
Query: 238 RSYRGCLVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEG 417
R + L++ G+D GP +Y + P G+ +G S AA E KR +E E
Sbjct: 128 RPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLE---KRYNDELEL 184
Query: 418 KKLVRDAIAA--GIFNDLGSGSNVDLCVI 498
V AI A F + N+++ V+
Sbjct: 185 DDAVHTAILALKETFEGELTEDNIEIAVV 213
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 29.5 bits (63), Expect = 0.52
Identities = 13/76 (17%), Positives = 37/76 (48%)
Frame = +2
Query: 2 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 181
IL DTR+ ++ + ++H + ++ +G AD + + +++L + R
Sbjct: 26 ILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQRIDLYHDNHER 85
Query: 182 TVPVETAATLLKRMLF 229
+ ++ A +++ +L+
Sbjct: 86 KMSAQSCACMVRTLLY 101
>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 209
Score = 28.7 bits (61), Expect = 0.91
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -3
Query: 322 LQIHEDKCSKYEDRFCQHLPKPDSPYMTLIAKQHSFQQCGSSFYW 188
L + D SK+ + +P+SPY+ + F C S W
Sbjct: 109 LILERDAPSKFSIELVEERREPESPYLLFFSNSSRFSACEESGEW 153
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 250 GCLVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFE 381
G LV+G D +GPH+ P G V + +MGS S +A E
Sbjct: 131 GFLVIG-YDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIE 173
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 6.4
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +1
Query: 316 SVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLC 492
SV KLP T+ + A F G+ + GK LV+D ++ I+N+ S N+ LC
Sbjct: 2381 SVYKLPIQTIAVNARNAEIAFSTGFYCCVVNVNGKILVKDKLSR-IYNE-NSDENI-LC 2436
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = -2
Query: 650 WAYQNRFY--LERYYTLLKHSSCTKSISVRAL 561
WA+ N++ L+RY +LLK+++ + + VR +
Sbjct: 1525 WAHWNQYQAILKRYVSLLKNNAIDQKVVVRLI 1556
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 531 YEEANVKGKKQGSYRYALGTTAVLKQRVIPLEVESILVRP 650
YE NV+ K+ +Y++ V+ ++I E SIL P
Sbjct: 334 YETINVEETKKETYKFTRSIKTVIPNKLISNESISILSIP 373
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -3
Query: 292 YEDRFCQHLPKPDSPYMTLIAKQHSFQQCGSSFYW 188
Y D H P P P ++ Q G +FYW
Sbjct: 130 YVDVIMAHRPDPSVPMEEVVRAFTQLIQDGKAFYW 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,247
Number of Sequences: 5004
Number of extensions: 61025
Number of successful extensions: 163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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