Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00949
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 126 1e-29
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 51 1e-06
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 50 2e-06
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 43 2e-04
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 39 0.004
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856 38 0.011
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 38 0.011
02_05_0057 + 25472872-25472912,25473012-25473157,25474008-254740... 35 0.077
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 34 0.10
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 33 0.31
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 31 1.3
10_07_0056 + 12451510-12451554,12453099-12453149,12453754-124538... 30 2.2
03_01_0591 - 4366400-4366558,4366782-4366985,4367078-4367152,436... 30 2.2
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 29 3.8
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 28 8.8
03_06_0736 + 35861265-35862047 28 8.8
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 126 bits (305), Expect = 1e-29
Identities = 60/90 (66%), Positives = 72/90 (80%), Gaps = 4/90 (4%)
Frame = +1
Query: 241 SYRG----CLVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNE 408
SY+G LVLGGVD TGPH++ +YPHGS D LP+ATMGSGSLAAM+VFE+ +K +
Sbjct: 127 SYQGHVSAALVLGGVDVTGPHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKYKEGLTR 186
Query: 409 EEGKKLVRDAIAAGIFNDLGSGSNVDLCVI 498
EEG +LV +AI GIFNDLGSGSNVD+CVI
Sbjct: 187 EEGIQLVAEAIRGGIFNDLGSGSNVDVCVI 216
Score = 121 bits (292), Expect = 5e-28
Identities = 55/84 (65%), Positives = 65/84 (77%)
Frame = +2
Query: 2 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 181
+LGADTRATE +V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL+L R TGR
Sbjct: 51 VLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGR 110
Query: 182 TVPVETAATLLKRMLFRYQGHIGA 253
V T+ TLLK LF YQGH+ A
Sbjct: 111 ESRVVTSLTLLKSHLFSYQGHVSA 134
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/84 (28%), Positives = 47/84 (55%)
Frame = +2
Query: 2 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 181
+L AD+R + V+++ KI L N+Y C +G+AADT++ ++ V L + G+
Sbjct: 38 VLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYVRYFLHQHTIQLGQ 97
Query: 182 TVPVETAATLLKRMLFRYQGHIGA 253
V+ AA L++ + ++ + + A
Sbjct: 98 PATVKVAANLIRLLAYQNKNMLQA 121
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 256 LVLGGVDR-TGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVR 432
+++GG D+ G I+ + G++ + P+A GSGS + + WK M++EE +K V
Sbjct: 123 MIVGGWDKYEGGQIFSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVV 182
Query: 433 DAIAAGIFNDLGSGSNV 483
++ I D SG V
Sbjct: 183 KVVSLAIARDGASGGVV 199
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/84 (28%), Positives = 46/84 (54%)
Frame = +2
Query: 2 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 181
+L AD+R + V+++ KI L N+Y C +G+AADT++ + V L + G+
Sbjct: 38 VLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQ 97
Query: 182 TVPVETAATLLKRMLFRYQGHIGA 253
V+ AA L++ + ++ + + A
Sbjct: 98 PATVKVAANLIRLLAYQNKNMLQA 121
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 256 LVLGGVDR-TGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVR 432
+++GG D+ G I+ + G++ + P+A GSGS + + WK M++EE +K V
Sbjct: 123 MIVGGWDKYEGGQIFSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVV 182
Query: 433 DAIAAGIFNDLGSGSNV 483
++ I D SG V
Sbjct: 183 KVVSLAIARDGASGGVV 199
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +1
Query: 241 SYRGC-----LVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMN 405
SYRG ++ G D GP +Y + G+ ++GSGSL A + + G++ M
Sbjct: 95 SYRGMGLSIGTMIAGWDEKGPGLYYVDSEGARLMGSRFSVGSGSLYAYGILDEGYRYVMP 154
Query: 406 EEEGKKLVRDAIAAGIFNDLGSGSNVDL 489
EE +L R AI F D SG V +
Sbjct: 155 VEEAAELARRAIYQATFRDGASGGCVSV 182
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 250 GC-LVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRD 399
GC ++LGG DR GP +Y I P G K A +G G AA G ++D
Sbjct: 133 GCGVILGGYDRDGPQLYMIEPSGLSYKYFGAALGKGRQAAKTCVYDGSRKD 183
>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
Length = 272
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = +1
Query: 229 SLSRSYRGCLVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNE 408
S R Y L++ G+D +G H+Y P G+ + +GS S AA E ++ N+
Sbjct: 125 SWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFE-GYND 183
Query: 409 EEGKKLVRDAIAA 447
++L++DA++A
Sbjct: 184 YTPEQLIKDALSA 196
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 250 GC-LVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFE 381
GC ++LGG DR GP +Y I P G K A +G G AA E
Sbjct: 141 GCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIE 185
>02_05_0057 +
25472872-25472912,25473012-25473157,25474008-25474072,
25474182-25474228,25474922-25474997,25475176-25475243,
25475862-25475931,25476178-25476263,25476418-25476480,
25476556-25476621,25476740-25476788
Length = 258
Score = 34.7 bits (76), Expect = 0.077
Identities = 22/89 (24%), Positives = 38/89 (42%)
Frame = +1
Query: 238 RSYRGCLVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEG 417
R + L++ G D GP +Y + P GS + MG A E + DM ++
Sbjct: 151 RPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDA 210
Query: 418 KKLVRDAIAAGIFNDLGSGSNVDLCVIRN 504
+ G + S +N+++ VIR+
Sbjct: 211 IHTAILTLKEGYEGQI-SANNIEIGVIRS 238
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 34.3 bits (75), Expect = 0.10
Identities = 21/89 (23%), Positives = 38/89 (42%)
Frame = +1
Query: 238 RSYRGCLVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEG 417
R + L++ G D GP +Y + P GS + MG A E + DM ++
Sbjct: 188 RPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDA 247
Query: 418 KKLVRDAIAAGIFNDLGSGSNVDLCVIRN 504
+ G + S +N+++ +IR+
Sbjct: 248 IHTAILTLKEGYEGQI-SANNIEIGIIRS 275
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 32.7 bits (71), Expect = 0.31
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 214 ETNAVSLSRSYRGCLVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWK 393
E + S+SR + L++ G D GP +Y P G+ + +GSGS A + + +
Sbjct: 138 EGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYN 197
Query: 394 RDMNE--EEGKKLVRDAI 441
+ + E K+ + +AI
Sbjct: 198 KSLTVFIYEKKRNIENAI 215
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +1
Query: 256 LVLGGVDRTGP-----HIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGK 420
LV+GGV + GP ++ + G+ + + G G+ A+ + W+ DM EE
Sbjct: 471 LVIGGVKK-GPKGEEKYLGMVNMIGTHFEENHIATGFGNHMAIPILRTEWREDMTFEEAV 529
Query: 421 KLVRDAIAAGIFNDLGS 471
KLV + ++ D S
Sbjct: 530 KLVEKCLLVLLYRDRSS 546
>10_07_0056 +
12451510-12451554,12453099-12453149,12453754-12453804,
12453879-12453944,12454011-12454072,12454459-12454537,
12454618-12454722,12454824-12454934,12455017-12455154,
12455298-12455399,12455400-12455474,12455574-12455694,
12455768-12455922,12456004-12456078,12456160-12456363,
12457105-12457221
Length = 518
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 403 NEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTALPNI*ELMKKLM 546
+ +G K +RDAIAAGI + G +N D + + A P + +M+ L+
Sbjct: 115 SHSQGIKGLRDAIAAGIASRDGYPANADDIFLTDGASPGVHMMMQLLI 162
>03_01_0591 -
4366400-4366558,4366782-4366985,4367078-4367152,
4367240-4367394,4367476-4367596,4367720-4367794,
4369435-4369572,4369655-4369765,4369844-4369948,
4370327-4370405,4370561-4370622,4370698-4370763,
4370840-4371024,4371095-4371173
Length = 537
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 403 NEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTALPNI*ELMKKLM 546
+ +G K +RD IAAGI + G +N D + N A P + +M+ L+
Sbjct: 154 SHSQGIKGLRDEIAAGIASRDGFPANADDIFLTNGASPGVHMMMQLLI 201
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Frame = +3
Query: 408 GRRKKACP---RCYCCWY 452
G +K ACP RCY CWY
Sbjct: 139 GHQKSACPGSTRCYNCWY 156
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 213 SSVAAVSTGTVRPVCKRCNS 154
S V +V+T T+RP+C RC +
Sbjct: 79 SPVESVTTATLRPICFRCTN 98
>03_06_0736 + 35861265-35862047
Length = 260
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = -2
Query: 635 RFYLERYYTLLKHSSCTKSISVRALLF----PLHISFFISS*ILGRAV-LRITHRSTLEP 471
RFY ++ L + +SI LL + F S+ +L R V L TH +TL P
Sbjct: 70 RFYYYFFFFFLSPRAINQSIDPHFLLLLFLQDVRFQFMNSALLLDRRVSLTYTHSTTLSP 129
Query: 470 EPKSLNIPAAI 438
P L A+
Sbjct: 130 GPAKLPARTAL 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,352,106
Number of Sequences: 37544
Number of extensions: 398452
Number of successful extensions: 878
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -