Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00949
(735 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 93 2e-19
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 46 4e-05
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z77661-2|CAB01184.4| 265|Caenorhabditis elegans Hypothetical pr... 31 1.1
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 30 1.5
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 93.1 bits (221), Expect = 2e-19
Identities = 40/84 (47%), Positives = 58/84 (69%)
Frame = +2
Query: 2 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 181
++GAD+RAT +++DK+C+K+H L ++Y CGAGTAAD + T+ ++ L L L+TGR
Sbjct: 59 VMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTGR 118
Query: 182 TVPVETAATLLKRMLFRYQGHIGA 253
V TA K+ LF YQG+IGA
Sbjct: 119 KARVITALRQAKQHLFNYQGYIGA 142
Score = 77.4 bits (182), Expect = 1e-14
Identities = 34/81 (41%), Positives = 54/81 (66%)
Frame = +1
Query: 256 LVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRD 435
L++GGVD TGPH+Y +G+ P+ GSGS AA+ + E +K DM ++E +KLV+
Sbjct: 144 LLIGGVDPTGPHLYMCSANGTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEKLVQR 203
Query: 436 AIAAGIFNDLGSGSNVDLCVI 498
A+ AG+ D SG++++L +I
Sbjct: 204 ALEAGMHGDNASGNSLNLVII 224
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/83 (33%), Positives = 44/83 (53%)
Frame = +1
Query: 259 VLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDA 438
++ G D+ GP I+ + G +L ++GSGSL A + + +K M ++E +KL A
Sbjct: 171 MVAGYDKKGPQIFKVDSEGDRCQLKVCSVGSGSLNAYGILDNHYKPKMTDDEARKLGLRA 230
Query: 439 IAAGIFNDLGSGSNVDLCVIRNT 507
I + D GSG +LC I T
Sbjct: 231 IMHATYRDSGSGGVCNLCHITPT 253
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/80 (30%), Positives = 37/80 (46%)
Frame = +2
Query: 2 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 181
I+ D+RA+ +S K+ KI + M AG AAD + T+ VA L L
Sbjct: 84 IVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKT 143
Query: 182 TVPVETAATLLKRMLFRYQG 241
++ V A+ L+ Y+G
Sbjct: 144 SITVSAASKYFANTLYGYRG 163
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/81 (32%), Positives = 37/81 (45%)
Frame = +1
Query: 256 LVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRD 435
LV G + G +Y I G V + GSGS ++ W+ ++ EE K +V+
Sbjct: 122 LVAGWDEELGGQVYAIPIGGFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQ 181
Query: 436 AIAAGIFNDLGSGSNVDLCVI 498
A+ F D SG V L VI
Sbjct: 182 AVGLATFRDGSSGGVVRLAVI 202
Score = 44.4 bits (100), Expect = 8e-05
Identities = 17/84 (20%), Positives = 43/84 (51%)
Frame = +2
Query: 2 ILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGR 181
++G D+R + + ++ + KI + NM C +G+AADT+ +++ + +
Sbjct: 36 VVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIAKYHIDVYTMTENK 95
Query: 182 TVPVETAATLLKRMLFRYQGHIGA 253
V + ++ + ++ L+ Y+ + A
Sbjct: 96 PVTIYRSSQIFRQFLYNYREQLSA 119
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/93 (23%), Positives = 46/93 (49%)
Frame = +1
Query: 229 SLSRSYRGCLVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNE 408
S+SR + ++ GVD+ G ++ + P G+ ++G+ S A + + +
Sbjct: 131 SMSRPFGVAMLFAGVDQEGAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTI 190
Query: 409 EEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNT 507
+EG K+ AI + + + +NV++ VI+ T
Sbjct: 191 KEGLKMAL-AILKQVMEEKLNSANVEVVVIKPT 222
>Z77661-2|CAB01184.4| 265|Caenorhabditis elegans Hypothetical
protein F40G12.2 protein.
Length = 265
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 38 VVSDKNCQKIHYLASNMYCC 97
V S +NC+K+H+L+SN + C
Sbjct: 210 VKSQENCEKVHFLSSNFWNC 229
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 256 LVLGGVDRTGPHIYCIYPHGSVDK-LPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVR 432
LV G D P+I C+ G V + +G+G + V E W+ +M +E +
Sbjct: 108 LVAGLDDTNKPYICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATA 167
Query: 433 DAIAAGIFNDLGSG 474
+I + + D SG
Sbjct: 168 QSILSCLERDAASG 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,753,811
Number of Sequences: 27780
Number of extensions: 349523
Number of successful extensions: 870
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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