Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00948
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   2.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   4.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.4  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 232 IARVQKYNLLRFHNLTSSWFLFIFDAEHFFQ 140
           +A V   N + F  L S   +  +++EHFF+
Sbjct: 310 VAEVMDRNGVLFFGLLSDLAIGCWNSEHFFE 340


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +1

Query: 235 KEKQKSIENIEKD---NEDVEMSSDDENVVVDSEGGKKRVF-NTKTLK 366
           KE++++I     D   N++V M + +     DS+  K ++F N + +K
Sbjct: 163 KEEEQTINRKNSDYLDNQEVSMENTENKSCTDSDIEKYKMFCNLENVK 210


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 183 PAGFSSSLTPSIFFNRANSFTAYRSRLIALHFRFHLLL 70
           P G  +S+ P   + +A  +T   +    L F  H++L
Sbjct: 29  PPGEINSINPINVYTKAYIYTIKSNMAKTLQFDVHMML 66


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 82  EAKMQGDQTRTVCG 123
           E   +G +TRTVCG
Sbjct: 620 EGLSEGMRTRTVCG 633


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,592
Number of Sequences: 438
Number of extensions: 2413
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)