Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00947X
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 72 7e-14
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 52 5e-08
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 41 1e-04
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 37 0.002
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.010
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.010
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 32 0.069
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.64
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 1.5
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 2.6
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 25 6.0
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 6.0
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 25 7.9
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 7.9
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 7.9
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 71.7 bits (168), Expect = 7e-14
Identities = 27/62 (43%), Positives = 35/62 (56%)
Frame = +3
Query: 57 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 236
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 237 CP 242
CP
Sbjct: 73 CP 74
Score = 71.7 bits (168), Expect = 7e-14
Identities = 34/79 (43%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +3
Query: 6 ARECTQGGVVSRDS-GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQS 182
AR+C G S G +R C+ C GH ARDC +CY C GH + EC Q+
Sbjct: 95 ARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV-KCYSCGKIGHRSFECQQA 153
Query: 183 PDEPSCYNCNKTGHIARNC 239
D CY CN+ GHIA NC
Sbjct: 154 SDGQLCYKCNQPGHIAVNC 172
Score = 71.3 bits (167), Expect = 9e-14
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +3
Query: 6 ARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNGTGHIARECAQ 179
ARECT+G + C+ CN+TGH A +C E + CY C GH+ R+C
Sbjct: 29 ARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPS 75
Query: 180 SPDE---PSCYNCNKTGHIARNCPEGGR 254
SP+ CY C + GHIAR+C G+
Sbjct: 76 SPNPRQGAECYKCGRVGHIARDCRTNGQ 103
Score = 56.8 bits (131), Expect = 2e-09
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Frame = +3
Query: 15 CTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD-----RCYRCNGTGHIARECAQ 179
C Q G + + +Q + C+ C GH RDC + CY+C GHIAR+C
Sbjct: 41 CNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRT 100
Query: 180 SPDEP-----------SCYNCNKTGHIARNCPEG 248
+ + +CY C GH AR+C G
Sbjct: 101 NGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Score = 56.4 bits (130), Expect = 3e-09
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Frame = +3
Query: 15 CTQGGVVSRD---SGFNRQREKCFKCNRTGHFARDCKEEADR-------------CYRCN 146
C G + RD S RQ +C+KC R GH ARDC+ + CY C
Sbjct: 63 CGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACG 122
Query: 147 GTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 245
GH AR+C CY+C K GH + C +
Sbjct: 123 SYGHQARDCTMG---VKCYSCGKIGHRSFECQQ 152
Score = 54.4 bits (125), Expect = 1e-08
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = +2
Query: 197 VLQLQQDGPHRTELSRGG--AKSATQ--TCYNCNKSGHISRNC--PDGTKTCYVCGKPGH 358
V Q + GP G A+ T+ CYNCN++GH + C P KTCY CG GH
Sbjct: 9 VPQTTRPGPRCYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGH 68
Query: 359 ISRECDEARN 388
+ R+C + N
Sbjct: 69 LVRDCPSSPN 78
Score = 50.4 bits (115), Expect = 2e-07
Identities = 21/39 (53%), Positives = 23/39 (58%)
Frame = +3
Query: 129 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 245
RCY C GH AREC + CYNCN+TGH A C E
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTE 53
Score = 50.0 bits (114), Expect = 2e-07
Identities = 22/47 (46%), Positives = 26/47 (55%)
Frame = +2
Query: 242 RGGAKSATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 382
R G + CY C GH +R+C G K CY CGK GH S EC +A
Sbjct: 108 RFGGHRSNMNCYACGSYGHQARDCTMGVK-CYSCGKIGHRSFECQQA 153
Score = 47.6 bits (108), Expect = 1e-06
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = +2
Query: 266 QTCYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISREC 373
+TCY C +GH+ R+CP CY CG+ GHI+R+C
Sbjct: 58 KTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 41.5 bits (93), Expect = 8e-05
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGT--KTCYVCGKPGHISREC 373
CY+C K GH S C + + CY C +PGHI+ C
Sbjct: 137 CYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 33.5 bits (73), Expect = 0.022
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 192 PSCYNCNKTGHIARNCPEG 248
P CYNC + GH AR C +G
Sbjct: 17 PRCYNCGENGHQARECTKG 35
Score = 30.7 bits (66), Expect = 0.16
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 266 QTCYNCNKSGHISRNC 313
Q CY CN+ GHI+ NC
Sbjct: 157 QLCYKCNQPGHIAVNC 172
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 52.4 bits (120), Expect = 5e-08
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 57 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 218
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 219 GHIARNCPEGGRSL 260
GH++ C + + L
Sbjct: 133 GHLSGQCEQNPKGL 146
Score = 36.7 bits (81), Expect = 0.002
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 236 LSRGGAKSATQTCYNCNKSGHISRNCP---DGTKTCYVCGKPGHISRECDE 379
L R ++ + C+ C + GHI ++CP D C+ CG H C +
Sbjct: 67 LRRINQRNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSK 117
Score = 32.3 bits (70), Expect = 0.052
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +2
Query: 251 AKSATQTCYNCNKSGHISRNC----PDGTKTCYVCGKPGHISRECDE 379
AK C+ C H C P C++C + GH+S +C++
Sbjct: 95 AKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQ 141
Score = 31.5 bits (68), Expect = 0.091
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Frame = +3
Query: 69 KCFKCNRTGHFARDCKE-------EADRCYRCNGTGHIARECAQ 179
KCF C+ GH + C++ + C C+ H+A++C Q
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 28.7 bits (61), Expect = 0.64
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 165 RECAQSPDEPSCYNCNKTGHIARNCPE 245
R Q + C+ C + GHI ++CPE
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPE 94
Score = 28.7 bits (61), Expect = 0.64
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 326 KTCYVCGKPGHISRECDEARN 388
K C+ C + GHI ++C EA++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +3
Query: 72 CFKCNRTGHFARDCKEEADRCYRCNGTG-HIARECAQSPDEPSCYNCNKTGHIARNCPE 245
C C GH ++DC C C HI+ C P C NC GHIA C E
Sbjct: 89 CHNCKGNGHISKDCPHVL--CTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARCSE 142
Score = 37.5 bits (83), Expect = 0.001
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 245 GGAKSATQTCYNCNKSGHISRNCPDGTKTCYVCGK-PGHISREC 373
G S + C+NC +GHIS++CP C CG HIS C
Sbjct: 80 GSDPSESIVCHNCKGNGHISKDCPH--VLCTTCGAIDDHISVRC 121
Score = 32.3 bits (70), Expect = 0.052
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Frame = +2
Query: 263 TQTCYNCNKSGHISRNCPD----GTKTCYVCGKPGHISREC 373
T+ C NC GHI+ C + G + C C H S C
Sbjct: 124 TKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164
Score = 28.7 bits (61), Expect = 0.64
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Frame = +3
Query: 66 EKCFKCNRTGHFARDCKEEADR----CYRCNGTGHIAREC 173
+KC C GH A C E R C C+ H + C
Sbjct: 125 KKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +2
Query: 266 QTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEARN*PQPP 403
Q C NC GH +CP+ C CG GHI+R+C R+ QPP
Sbjct: 309 QVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC-PVRD-QQPP 357
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +3
Query: 60 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 194
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 35.5 bits (78), Expect = 0.006
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +3
Query: 117 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCP 242
+E C C GH +C + + C +C GHIAR+CP
Sbjct: 306 DENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 25.0 bits (52), Expect = 7.9
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 198 CYNCNKTGHIARNCPE 245
C NC GH +CPE
Sbjct: 311 CQNCGNVGHRRFDCPE 326
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.010
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 296 HISRNCPDGTKTCYVCGKPGHISREC 373
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 96 HFARDCKEEADRCYRCNGTGHIAREC 173
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 269 TCYNCNKSGHISRNC 313
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 72 CFKCNRTGHFARDCK 116
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.010
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 296 HISRNCPDGTKTCYVCGKPGHISREC 373
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.0
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 96 HFARDCKEEADRCYRCNGTGHIAREC 173
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 269 TCYNCNKSGHISRNC 313
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 72 CFKCNRTGHFARDCK 116
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 31.9 bits (69), Expect = 0.069
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +2
Query: 161 SARVRTEPGRAVVLQLQQDGPHRTELSRGGAKSATQTCYNCN-KSGHISRNCPDGTKTCY 337
S + + V +D R A + T TC NC ++ + R PDG C
Sbjct: 598 SFNINKNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCN 657
Query: 338 VCG 346
CG
Sbjct: 658 ACG 660
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.7 bits (61), Expect = 0.64
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 236 LSRGGAKSATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 352
L+ G K T+ C NC + GH+ N K C + G+P
Sbjct: 935 LNGEGRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 177 QSPDEPSCYNCNKTGHIARN--CPEGGR 254
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 54 NRQREKCFKCNRTGHFARDCKEEA 125
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +3
Query: 72 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 197
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +3
Query: 165 RECAQSPDEPS-----CYNCNKTGHIARNCP 242
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTKTCYVCGKP 352
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 64 VRSASSATAQDTLRGIARKRLTVA 135
VRSA S+ Q T R +A+ +TVA
Sbjct: 50 VRSARSSMEQPTFRPVAKNSVTVA 73
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 314 PDGTKTCYVCGKPGHISRECDEARN 388
PDGT YV +PG IS +A N
Sbjct: 64 PDGTTMVYVFPRPGTISPWSSKATN 88
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 7.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 483 IVCRAWRPLLIVRAWHH 433
I+ AWR L AWHH
Sbjct: 213 IIWSAWRKLPDAEAWHH 229
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.0 bits (52), Expect = 7.9
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 158 HSARVRTEP---GRAVVLQLQQDGPHRTELSRGGAKSATQTCYNCNKSG 295
H+ +V E G+ L LQ+ RGG + + ++C +CN SG
Sbjct: 112 HTIKVTLEDLYRGKTTKLALQKKVICPKCSGRGGKEGSVKSCASCNGSG 160
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 51 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 149
F CFKC + F K+E Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,817
Number of Sequences: 5004
Number of extensions: 38371
Number of successful extensions: 199
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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