Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00947X
(572 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 69 3e-12
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 52 4e-07
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 52 4e-07
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 52 4e-07
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 51 5e-07
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 51 5e-07
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 51 7e-07
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 49 3e-06
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 49 3e-06
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 49 3e-06
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 43 1e-04
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 43 1e-04
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 42 3e-04
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 42 3e-04
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 42 3e-04
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 40 0.002
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 40 0.002
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 40 0.002
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 37 0.009
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 34 0.020
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 36 0.020
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 36 0.020
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 33 0.14
Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical pr... 31 0.44
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 31 0.44
Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 31 0.58
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 30 1.0
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 30 1.3
U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical pr... 30 1.3
U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical pr... 30 1.3
U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 30 1.3
Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 29 1.8
AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical... 29 1.8
AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical... 29 1.8
U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 29 2.3
Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 29 3.1
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 29 3.1
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 28 4.1
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 28 4.1
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 28 4.1
AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical ... 27 7.2
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z79600-7|CAI79194.1| 173|Caenorhabditis elegans Hypothetical pr... 27 9.5
U80955-3|AAM97944.1| 95|Caenorhabditis elegans Mlp/crp family ... 27 9.5
U80955-1|AAM97945.1| 113|Caenorhabditis elegans Mlp/crp family ... 27 9.5
U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical pr... 27 9.5
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 68.5 bits (160), Expect = 3e-12
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 22/102 (21%)
Frame = +3
Query: 3 FARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE-------------------- 122
F+R+C +GG G C+ C GH++RDC
Sbjct: 46 FSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFG 105
Query: 123 ADRCYRCNGTGHIARECAQ--SPDEPSCYNCNKTGHIARNCP 242
+CY C +GHI+REC + S +E CY C +TGHI+R+CP
Sbjct: 106 GQKCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDCP 147
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 248 GAKSATQTCYNCNKSGHISRNCPDG----TKTCYVCGKPGHISRECDEARN 388
G Q CYNC +SGHISR C + K CY C + GHISR+C N
Sbjct: 101 GRSFGGQKCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDCPSQTN 151
Score = 54.4 bits (125), Expect = 5e-08
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 30/90 (33%)
Frame = +3
Query: 72 CFKCNRTGHFARDCKEEAD------------RCYRCNGTGHIARECAQSPDE-------- 191
C+ C TGHF+RDC + CY C G GH +R+C + E
Sbjct: 37 CYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGYGG 96
Query: 192 ----------PSCYNCNKTGHIARNCPEGG 251
CYNC ++GHI+R C E G
Sbjct: 97 RGGEGRSFGGQKCYNCGRSGHISRECTESG 126
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 10/53 (18%)
Frame = +3
Query: 123 ADR-CYRCNGTGHIARECAQSPDE---------PSCYNCNKTGHIARNCPEGG 251
+DR CY+C GHI+R C + +CYNC +TGH +R+CP+GG
Sbjct: 2 SDRNCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGG 54
Score = 51.6 bits (118), Expect = 4e-07
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 21/78 (26%)
Frame = +3
Query: 72 CFKCNRTGHFARDCKE-EAD----------RCYRCNGTGHIARECAQSPD---------- 188
C+KC + GH +R+C E+D CY C TGH +R+C +
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRGGGGG 65
Query: 189 EPSCYNCNKTGHIARNCP 242
SCYNC GH +R+CP
Sbjct: 66 GGSCYNCGGRGHYSRDCP 83
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 12/61 (19%)
Frame = +2
Query: 242 RGGAKSATQTCYNCNKSGHISRNCPDGTK------------TCYVCGKPGHISRECDEAR 385
RGG +T CYNC ++GH SR+CP G +CY CG GH SR+C AR
Sbjct: 29 RGGGGGST--CYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSAR 86
Query: 386 N 388
+
Sbjct: 87 S 87
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 11/47 (23%)
Frame = +2
Query: 266 QTCYNCNKSGHISRNCPDGT-----------KTCYVCGKPGHISREC 373
+ CY C + GHISRNCP+G TCY C + GH SR+C
Sbjct: 4 RNCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDC 50
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 20/75 (26%)
Frame = +2
Query: 242 RGGAKSATQTCYNCNKSGHISRNCPD--------------------GTKTCYVCGKPGHI 361
RGG +CYNC GH SR+CP G + CY CG+ GHI
Sbjct: 60 RGGGGGGG-SCYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHI 118
Query: 362 SRECDEARN*PQPPC 406
SREC E+ + + C
Sbjct: 119 SRECTESGSAEEKRC 133
Score = 35.5 bits (78), Expect = 0.027
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +3
Query: 15 CTQGGVVSRD---SGFNRQREKCFKCNRTGHFARDCKEEAD 128
C + G +SR+ SG + + ++C++C TGH +RDC + +
Sbjct: 112 CGRSGHISRECTESG-SAEEKRCYQCQETGHISRDCPSQTN 151
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +2
Query: 248 GAKSATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 385
G C+NC + GH S +CP+ K CY C +PGH SREC E R
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 50.8 bits (116), Expect = 7e-07
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +2
Query: 245 GGAKSATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 373
GG + C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 235 GGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 44.4 bits (100), Expect = 6e-05
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 129 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 242
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +3
Query: 48 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 179
G + CF C + GH + DC KE R CY C GH +REC +
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +3
Query: 24 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 194
GG G R KCF C GH + +C E C+ C GH + EC +P +P
Sbjct: 228 GGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 283
Score = 41.1 bits (92), Expect = 5e-04
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 117 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 245
E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 33.1 bits (72), Expect(2) = 0.007
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 209 QQDGPHRTELSRGGAKSATQTCYNCNKSGHISRNCPDGTK 328
QQ G ++ + + CYNC + GH SR C + K
Sbjct: 164 QQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 30.3 bits (65), Expect = 1.0
Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 20/100 (20%)
Frame = +3
Query: 15 CTQGGVVSRDSGFNRQREK---CFKCNRTGHFARDCKEE-ADRCYRCNGTGHIAR----- 167
C Q G S D R+ + C+ C + GH +R+C EE R R G G A
Sbjct: 163 CQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNG 222
Query: 168 -----------ECAQSPDEPSCYNCNKTGHIARNCPEGGR 254
+ C+NC GH + CPE R
Sbjct: 223 GNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR 262
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTK 328
C+NC + GH S CP+ K
Sbjct: 264 CFNCGEQGHRSNECPNPAK 282
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 332 CYVCGKPGHISRECDEARN*PQP 400
C+ C +PGH S +C E R +P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
Score = 23.4 bits (48), Expect(2) = 0.007
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 320 GTKTCYVCGKPGHISRECDE 379
G C+ C GH S EC E
Sbjct: 240 GPMKCFNCKGEGHRSAECPE 259
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +2
Query: 248 GAKSATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 385
G C+NC + GH S +CP+ K CY C +PGH SREC E R
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 50.8 bits (116), Expect = 7e-07
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +2
Query: 245 GGAKSATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 373
GG + C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 235 GGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 44.4 bits (100), Expect = 6e-05
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 129 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 242
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +3
Query: 48 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 179
G + CF C + GH + DC KE R CY C GH +REC +
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +3
Query: 24 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 194
GG G R KCF C GH + +C E C+ C GH + EC +P +P
Sbjct: 228 GGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 283
Score = 41.1 bits (92), Expect = 5e-04
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 117 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 245
E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 33.1 bits (72), Expect(2) = 0.007
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 209 QQDGPHRTELSRGGAKSATQTCYNCNKSGHISRNCPDGTK 328
QQ G ++ + + CYNC + GH SR C + K
Sbjct: 164 QQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 30.3 bits (65), Expect = 1.0
Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 20/100 (20%)
Frame = +3
Query: 15 CTQGGVVSRDSGFNRQREK---CFKCNRTGHFARDCKEE-ADRCYRCNGTGHIAR----- 167
C Q G S D R+ + C+ C + GH +R+C EE R R G G A
Sbjct: 163 CQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNG 222
Query: 168 -----------ECAQSPDEPSCYNCNKTGHIARNCPEGGR 254
+ C+NC GH + CPE R
Sbjct: 223 GNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR 262
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTK 328
C+NC + GH S CP+ K
Sbjct: 264 CFNCGEQGHRSNECPNPAK 282
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 332 CYVCGKPGHISRECDEARN*PQP 400
C+ C +PGH S +C E R +P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
Score = 23.4 bits (48), Expect(2) = 0.007
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 320 GTKTCYVCGKPGHISRECDE 379
G C+ C GH S EC E
Sbjct: 240 GPMKCFNCKGEGHRSAECPE 259
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +2
Query: 248 GAKSATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 385
G C+NC + GH S +CP+ K CY C +PGH SREC E R
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 50.8 bits (116), Expect = 7e-07
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +2
Query: 245 GGAKSATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 373
GG + C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 235 GGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 44.4 bits (100), Expect = 6e-05
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 129 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 242
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +3
Query: 48 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 179
G + CF C + GH + DC KE R CY C GH +REC +
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +3
Query: 24 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 194
GG G R KCF C GH + +C E C+ C GH + EC +P +P
Sbjct: 228 GGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 283
Score = 41.1 bits (92), Expect = 5e-04
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 117 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 245
E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 33.1 bits (72), Expect(2) = 0.007
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 209 QQDGPHRTELSRGGAKSATQTCYNCNKSGHISRNCPDGTK 328
QQ G ++ + + CYNC + GH SR C + K
Sbjct: 164 QQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 30.3 bits (65), Expect = 1.0
Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 20/100 (20%)
Frame = +3
Query: 15 CTQGGVVSRDSGFNRQREK---CFKCNRTGHFARDCKEE-ADRCYRCNGTGHIAR----- 167
C Q G S D R+ + C+ C + GH +R+C EE R R G G A
Sbjct: 163 CQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNG 222
Query: 168 -----------ECAQSPDEPSCYNCNKTGHIARNCPEGGR 254
+ C+NC GH + CPE R
Sbjct: 223 GNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR 262
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTK 328
C+NC + GH S CP+ K
Sbjct: 264 CFNCGEQGHRSNECPNPAK 282
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 332 CYVCGKPGHISRECDEARN*PQP 400
C+ C +PGH S +C E R +P
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREP 182
Score = 23.4 bits (48), Expect(2) = 0.007
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 320 GTKTCYVCGKPGHISRECDE 379
G C+ C GH S EC E
Sbjct: 240 GPMKCFNCKGEGHRSAECPE 259
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 51.2 bits (117), Expect = 5e-07
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = +3
Query: 15 CTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKE---EADRCYRCNGTGHIARECAQS 182
C + G +S++ + R C C + GHFA DC + C C GH A +C Q
Sbjct: 575 CGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQ- 633
Query: 183 PDEP--SCYNCNKTGHIARNC 239
P P C NC + GH A++C
Sbjct: 634 PKVPRGPCRNCGQEGHFAKDC 654
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +3
Query: 72 CFKCNRTGHFARDC-KEEADR--CYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARN 236
C C GH +++C K + R C C GH A +C Q P P C NC GH A +
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQ-PRVPRGPCRNCGIEGHFAVD 630
Query: 237 CPE 245
C +
Sbjct: 631 CDQ 633
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTKT----CYVCGKPGHISRECDEARN*PQPPC 406
C+NC + GHIS+ C D K C C + GH + +CD+ R P+ PC
Sbjct: 572 CHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQPRV-PRGPC 618
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 84 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARNCPE 245
N+ G++ D E C+ C GHI++EC P P C NC + GH A +C +
Sbjct: 558 NQRGNW--DGGERPRGCHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQ 610
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Frame = +3
Query: 63 REKCFKCNRTGHFARDCKEEADR------CYRCNGTGHIARECAQSPDE 191
R C C + GHFA+DC+ E R C RC GH EC P +
Sbjct: 638 RGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPKD 686
Score = 35.5 bits (78), Expect = 0.027
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 332 CYVCGKPGHISRECDEARN*PQPPCLPYNQL 424
C+ CG+ GHIS+ECD+ + P+ PC QL
Sbjct: 572 CHNCGEEGHISKECDKPKV-PRFPCRNCEQL 601
Score = 35.1 bits (77), Expect = 0.036
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTKT----CYVCGKPGHISREC--DEARN*PQPPC 406
C NC GH + +C D K C CG+ GH +++C + R P PC
Sbjct: 618 CRNCGIEGHFAVDC-DQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPC 667
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Frame = +2
Query: 272 CYNCNKSGHISRNCP------DGTKTCYVCGKPGHISREC 373
C NC + GH +++C + T+ C C + GH EC
Sbjct: 641 CRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 51.2 bits (117), Expect = 5e-07
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Frame = +3
Query: 15 CTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKE---EADRCYRCNGTGHIARECAQS 182
C + G +S++ + R C C + GHFA DC + C C GH A +C Q
Sbjct: 575 CGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQ- 633
Query: 183 PDEP--SCYNCNKTGHIARNC 239
P P C NC + GH A++C
Sbjct: 634 PKVPRGPCRNCGQEGHFAKDC 654
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +3
Query: 72 CFKCNRTGHFARDC-KEEADR--CYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARN 236
C C GH +++C K + R C C GH A +C Q P P C NC GH A +
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQ-PRVPRGPCRNCGIEGHFAVD 630
Query: 237 CPE 245
C +
Sbjct: 631 CDQ 633
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTKT----CYVCGKPGHISRECDEARN*PQPPC 406
C+NC + GHIS+ C D K C C + GH + +CD+ R P+ PC
Sbjct: 572 CHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQPRV-PRGPC 618
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 84 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARNCPE 245
N+ G++ D E C+ C GHI++EC P P C NC + GH A +C +
Sbjct: 558 NQRGNW--DGGERPRGCHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQ 610
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Frame = +3
Query: 63 REKCFKCNRTGHFARDCKEEADR------CYRCNGTGHIARECAQSPDE 191
R C C + GHFA+DC+ E R C RC GH EC P +
Sbjct: 638 RGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPKD 686
Score = 35.5 bits (78), Expect = 0.027
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 332 CYVCGKPGHISRECDEARN*PQPPCLPYNQL 424
C+ CG+ GHIS+ECD+ + P+ PC QL
Sbjct: 572 CHNCGEEGHISKECDKPKV-PRFPCRNCEQL 601
Score = 35.1 bits (77), Expect = 0.036
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTKT----CYVCGKPGHISREC--DEARN*PQPPC 406
C NC GH + +C D K C CG+ GH +++C + R P PC
Sbjct: 618 CRNCGIEGHFAVDC-DQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPC 667
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Frame = +2
Query: 272 CYNCNKSGHISRNCP------DGTKTCYVCGKPGHISREC 373
C NC + GH +++C + T+ C C + GH EC
Sbjct: 641 CRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Frame = +3
Query: 72 CFKCNRTGHFARDCKEEADR------CYRCNGTGHIARECAQS-----PDEPSCYNCNKT 218
CFKC H +CK++ + C+ C GHI+R+C Q+ PD C C
Sbjct: 256 CFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVGHISRDCHQNVNGVYPDGGCCNVCGAN 315
Query: 219 GHIARNCPE 245
H+ R+CPE
Sbjct: 316 THLRRDCPE 324
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Frame = +2
Query: 269 TCYNCNKSGHISRNC--------PDGTKTCYVCGKPGHISRECDE 379
TC+ C + GHISR+C PDG C VCG H+ R+C E
Sbjct: 281 TCFVCKQVGHISRDCHQNVNGVYPDG-GCCNVCGANTHLRRDCPE 324
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +2
Query: 209 QQDGPHRTELSRGGAKSATQTCYNCNKSGHISRNCPD-GTK-----TCYVCGKPGHISRE 370
++ G + + + S+ C+ C H C G K TC+VC + GHISR+
Sbjct: 235 REPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVGHISRD 294
Query: 371 CDEARN 388
C + N
Sbjct: 295 CHQNVN 300
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +2
Query: 236 LSRGGAKSATQTCYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISREC 373
+ R K C++C + GH +CP + C+ CG H EC
Sbjct: 219 IGRQDQKITGSACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHEC 269
Score = 31.5 bits (68), Expect = 0.44
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Frame = +3
Query: 24 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQ---SPDEP 194
G V D+ +R K + R G +D K C+ C GH +C + S +
Sbjct: 197 GKVTVADAMLLVKRWKTRETRRIGR--QDQKITGSACFHCREPGHRLADCPKRNSSSSDG 254
Query: 195 SCYNCNKTGHIARNCPEGG 251
C+ C H C + G
Sbjct: 255 VCFKCGSMEHSIHECKKKG 273
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 385
C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 385
C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 47.2 bits (107), Expect = 8e-06
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 373
C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 455 CFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 90 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 245
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 90 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 245
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 45 SGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 224
SGF + F F + + +C+ C G GH + EC + P C+NC + GH
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGH 483
Query: 225 IARNCP 242
+ CP
Sbjct: 484 RSNECP 489
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 24 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 194
GG + G N +R KCF C GH + +C E C+ C GH + EC +P +P
Sbjct: 437 GGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 494
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +3
Query: 60 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 179
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +3
Query: 60 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 179
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 35.5 bits (78), Expect = 0.027
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 209 QQDGPHRTELSRGGAKSATQTCYNCNKSGHISRNCPDGTK 328
QQ G + + + CYNC + GH SR+CP+ K
Sbjct: 263 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 35.5 bits (78), Expect = 0.027
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 209 QQDGPHRTELSRGGAKSATQTCYNCNKSGHISRNCPDGTK 328
QQ G + + + CYNC + GH SR+CP+ K
Sbjct: 377 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 33.1 bits (72), Expect = 0.14
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Frame = +3
Query: 15 CTQGGVVSRDSGF-NRQREK--CFKCNRTGHFARDCKEEADRCYRCNG------------ 149
C Q G S D ++RE C+ C + GH +RDC EE NG
Sbjct: 376 CQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGG 435
Query: 150 -TGHIARECAQSPDE--PSCYNCNKTGHIARNCPEGGR 254
G A + + C+NC GH + CPE R
Sbjct: 436 FGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPR 473
Score = 30.7 bits (66), Expect = 0.77
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 15 CTQGGVVSRDSGF-NRQREK--CFKCNRTGHFARDCKEE 122
C Q G S D ++RE C+ C + GH +RDC EE
Sbjct: 262 CQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE 300
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTK 328
C+NC + GH S CP+ K
Sbjct: 475 CFNCGEQGHRSNECPNPAK 493
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 290 SGHISRNCPDGTKTCYVCGKPGHISRECDEARN*PQP 400
SG ++ + C+ C +PGH S +C E + +P
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 281
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 290 SGHISRNCPDGTKTCYVCGKPGHISRECDEARN*PQP 400
SG ++ + C+ C +PGH S +C E + +P
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 395
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 385
C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 385
C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 47.2 bits (107), Expect = 8e-06
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 373
C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 455 CFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 90 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 245
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 90 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 245
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 45 SGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 224
SGF + F F + + +C+ C G GH + EC + P C+NC + GH
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGH 483
Query: 225 IARNCP 242
+ CP
Sbjct: 484 RSNECP 489
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 24 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 194
GG + G N +R KCF C GH + +C E C+ C GH + EC +P +P
Sbjct: 437 GGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 494
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +3
Query: 60 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 179
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +3
Query: 60 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 179
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 35.5 bits (78), Expect = 0.027
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 209 QQDGPHRTELSRGGAKSATQTCYNCNKSGHISRNCPDGTK 328
QQ G + + + CYNC + GH SR+CP+ K
Sbjct: 263 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 35.5 bits (78), Expect = 0.027
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 209 QQDGPHRTELSRGGAKSATQTCYNCNKSGHISRNCPDGTK 328
QQ G + + + CYNC + GH SR+CP+ K
Sbjct: 377 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 33.1 bits (72), Expect = 0.14
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Frame = +3
Query: 15 CTQGGVVSRDSGF-NRQREK--CFKCNRTGHFARDCKEEADRCYRCNG------------ 149
C Q G S D ++RE C+ C + GH +RDC EE NG
Sbjct: 376 CQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGG 435
Query: 150 -TGHIARECAQSPDE--PSCYNCNKTGHIARNCPEGGR 254
G A + + C+NC GH + CPE R
Sbjct: 436 FGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPR 473
Score = 30.7 bits (66), Expect = 0.77
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 15 CTQGGVVSRDSGF-NRQREK--CFKCNRTGHFARDCKEE 122
C Q G S D ++RE C+ C + GH +RDC EE
Sbjct: 262 CQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE 300
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTK 328
C+NC + GH S CP+ K
Sbjct: 475 CFNCGEQGHRSNECPNPAK 493
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 290 SGHISRNCPDGTKTCYVCGKPGHISRECDEARN*PQP 400
SG ++ + C+ C +PGH S +C E + +P
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 281
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 290 SGHISRNCPDGTKTCYVCGKPGHISRECDEARN*PQP 400
SG ++ + C+ C +PGH S +C E + +P
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 395
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 385
C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEAR 385
C+NC + GH S +CP+ K CY C +PGH SR+C E R
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 47.2 bits (107), Expect = 8e-06
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTKTCYVCGKPGHISREC 373
C+NC GH S CP+ + C+ CG+ GH S EC
Sbjct: 455 CFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 90 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 245
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 90 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 245
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 45 SGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 224
SGF + F F + + +C+ C G GH + EC + P C+NC + GH
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGH 483
Query: 225 IARNCP 242
+ CP
Sbjct: 484 RSNECP 489
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 24 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 194
GG + G N +R KCF C GH + +C E C+ C GH + EC +P +P
Sbjct: 437 GGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 494
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +3
Query: 60 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 179
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +3
Query: 60 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 179
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 35.5 bits (78), Expect = 0.027
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 209 QQDGPHRTELSRGGAKSATQTCYNCNKSGHISRNCPDGTK 328
QQ G + + + CYNC + GH SR+CP+ K
Sbjct: 263 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 35.5 bits (78), Expect = 0.027
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 209 QQDGPHRTELSRGGAKSATQTCYNCNKSGHISRNCPDGTK 328
QQ G + + + CYNC + GH SR+CP+ K
Sbjct: 377 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 33.1 bits (72), Expect = 0.14
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Frame = +3
Query: 15 CTQGGVVSRDSGF-NRQREK--CFKCNRTGHFARDCKEEADRCYRCNG------------ 149
C Q G S D ++RE C+ C + GH +RDC EE NG
Sbjct: 376 CQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGG 435
Query: 150 -TGHIARECAQSPDE--PSCYNCNKTGHIARNCPEGGR 254
G A + + C+NC GH + CPE R
Sbjct: 436 FGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPR 473
Score = 30.7 bits (66), Expect = 0.77
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 15 CTQGGVVSRDSGF-NRQREK--CFKCNRTGHFARDCKEE 122
C Q G S D ++RE C+ C + GH +RDC EE
Sbjct: 262 CQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE 300
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTK 328
C+NC + GH S CP+ K
Sbjct: 475 CFNCGEQGHRSNECPNPAK 493
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 290 SGHISRNCPDGTKTCYVCGKPGHISRECDEARN*PQP 400
SG ++ + C+ C +PGH S +C E + +P
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 281
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 290 SGHISRNCPDGTKTCYVCGKPGHISRECDEARN*PQP 400
SG ++ + C+ C +PGH S +C E + +P
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP 395
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 263 TQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE-ARN*PQPP 403
+ TC+NC K GH + C + C CG P H + EC ++N Q P
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEP 248
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 72 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECA 176
CF C + GH A +C C C H A ECA
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECA 238
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 123 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 239
++ C+ C GH A EC S + C NC H A C
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANEC 237
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 263 TQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDE-ARN*PQPP 403
+ TC+NC K GH + C + C CG P H + EC ++N Q P
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEP 248
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 72 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECA 176
CF C + GH A +C C C H A ECA
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECA 238
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 123 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 239
++ C+ C GH A EC S + C NC H A C
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANEC 237
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 245 GGAKSATQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRECDEARN*PQP 400
G K+ + C+ C K + H +++CP+ K CY CG H+S C E R +P
Sbjct: 104 GRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 159
Score = 35.1 bits (77), Expect = 0.036
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 129 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 254
RC+RC H A+ C D CY C H++ CPE R
Sbjct: 112 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 155
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 69 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 179
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 112 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 152
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 245 GGAKSATQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRECDEARN*PQP 400
G K+ + C+ C K + H +++CP+ K CY CG H+S C E R +P
Sbjct: 135 GRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
Score = 35.1 bits (77), Expect = 0.036
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 129 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 254
RC+RC H A+ C D CY C H++ CPE R
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 186
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 69 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 179
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 245 GGAKSATQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRECDEARN*PQP 400
G K+ + C+ C K + H +++CP+ K CY CG H+S C E R +P
Sbjct: 135 GRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
Score = 35.1 bits (77), Expect = 0.036
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 129 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 254
RC+RC H A+ C D CY C H++ CPE R
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 186
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 69 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 179
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 245 GGAKSATQTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRECDEARN*PQP 400
G K+ + C+ C K + H +++CP+ K CY CG H+S C E R +P
Sbjct: 135 GRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
Score = 35.1 bits (77), Expect = 0.036
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +3
Query: 129 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 254
RC+RC H A+ C D CY C H++ CPE R
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 186
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 69 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 179
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +3
Query: 66 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 230
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHIA
Sbjct: 629 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 687
Query: 231 RNCPE 245
NCP+
Sbjct: 688 WNCPK 692
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 66 EKCFKCNRTGHFARDCKEEADR-CYRCNGTGHIARECAQSPDEPS 197
+KC +C ++G C + +R C+RCN GHIA C + + S
Sbjct: 654 QKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNCPKKNENTS 698
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 209 QQDGPHRTELSRGGAKSATQTCYNCNKSG-HISRNCPDGTKTCYVCGKPGHISREC 373
QQ G H S+ +A+Q C C +SG H++ + C+ C + GHI+ C
Sbjct: 635 QQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNC 690
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 12 ECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE 122
EC Q G S F + CF+CN GH A +C ++
Sbjct: 658 ECQQSGW-HMASCFKLKNRACFRCNEMGHIAWNCPKK 693
Score = 31.5 bits (68), Expect = 0.44
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 254 KSATQTCYNCNKSGHISRNCP 316
K + C+ CN+ GHI+ NCP
Sbjct: 671 KLKNRACFRCNEMGHIAWNCP 691
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +3
Query: 66 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 230
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHIA
Sbjct: 532 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 590
Query: 231 RNCPE 245
NCP+
Sbjct: 591 WNCPK 595
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 66 EKCFKCNRTGHFARDCKEEADR-CYRCNGTGHIARECAQSPDEPS 197
+KC +C ++G C + +R C+RCN GHIA C + + S
Sbjct: 557 QKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNCPKKNENTS 601
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 209 QQDGPHRTELSRGGAKSATQTCYNCNKSG-HISRNCPDGTKTCYVCGKPGHISREC 373
QQ G H S+ +A+Q C C +SG H++ + C+ C + GHI+ C
Sbjct: 538 QQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNC 593
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 12 ECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE 122
EC Q G S F + CF+CN GH A +C ++
Sbjct: 561 ECQQSGW-HMASCFKLKNRACFRCNEMGHIAWNCPKK 596
Score = 31.5 bits (68), Expect = 0.44
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 254 KSATQTCYNCNKSGHISRNCP 316
K + C+ CN+ GHI+ NCP
Sbjct: 574 KLKNRACFRCNEMGHIAWNCP 594
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +3
Query: 66 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 230
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHIA
Sbjct: 543 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 601
Query: 231 RNCPE 245
NCP+
Sbjct: 602 WNCPK 606
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 66 EKCFKCNRTGHFARDCKEEADR-CYRCNGTGHIARECAQSPDEPS 197
+KC +C ++G C + +R C+RCN GHIA C + + S
Sbjct: 568 QKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNCPKKNENTS 612
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 209 QQDGPHRTELSRGGAKSATQTCYNCNKSG-HISRNCPDGTKTCYVCGKPGHISREC 373
QQ G H S+ +A+Q C C +SG H++ + C+ C + GHI+ C
Sbjct: 549 QQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNC 604
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 12 ECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE 122
EC Q G S F + CF+CN GH A +C ++
Sbjct: 572 ECQQSGW-HMASCFKLKNRACFRCNEMGHIAWNCPKK 607
Score = 31.5 bits (68), Expect = 0.44
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 254 KSATQTCYNCNKSGHISRNCP 316
K + C+ CN+ GHI+ NCP
Sbjct: 585 KLKNRACFRCNEMGHIAWNCP 605
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 37.1 bits (82), Expect = 0.009
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 266 QTCYNCNKSGHISRNCPDG 322
+ CY C + GHISRNCP+G
Sbjct: 4 RNCYKCQQPGHISRNCPNG 22
Score = 35.5 bits (78), Expect = 0.027
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 195 SCYNCNKTGHIARNCPEG 248
+CY C + GHI+RNCP G
Sbjct: 5 NCYKCQQPGHISRNCPNG 22
Score = 31.1 bits (67), Expect = 0.58
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 326 KTCYVCGKPGHISREC 373
+ CY C +PGHISR C
Sbjct: 4 RNCYKCQQPGHISRNC 19
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 72 CFKCNRTGHFARDCKE-EADRCYRCNGTGHI 161
C+KC + GH +R+C E+D R G G +
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGGGV 36
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +3
Query: 123 ADR-CYRCNGTGHIAREC 173
+DR CY+C GHI+R C
Sbjct: 2 SDRNCYKCQQPGHISRNC 19
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 34.3 bits (75), Expect = 0.062
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = +3
Query: 72 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARN 236
C C+ GH A C + R N H + + PD+ + CY C + GH A
Sbjct: 206 CHNCHERGHKATTCPHLPGQT-RQNQDHHHRVDLSLIPDKKNLSDVTCYKCGEKGHYANR 264
Query: 237 CPEG 248
C +G
Sbjct: 265 CHKG 268
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 212 QDGPHRTELSRGGAKS--ATQTCYNCNKSGHISRNCPDG 322
QD HR +LS K + TCY C + GH + C G
Sbjct: 230 QDHHHRVDLSLIPDKKNLSDVTCYKCGEKGHYANRCHKG 268
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 72 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 170
C+KC GH+A C + A + N T H+A E
Sbjct: 252 CYKCGEKGHYANRCHKGA-LAFLSN-TAHLAHE 282
Score = 27.9 bits (59), Expect(2) = 0.020
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 269 TCYNCNKSGHISRNCP 316
TC+NC++ GH + CP
Sbjct: 205 TCHNCHERGHKATTCP 220
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 195 SCYNCNKTGHIARNCP 242
+C+NC++ GH A CP
Sbjct: 205 TCHNCHERGHKATTCP 220
Score = 27.1 bits (57), Expect(2) = 0.020
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 329 TCYVCGKPGHISREC 373
TCY CG+ GH + C
Sbjct: 251 TCYKCGEKGHYANRC 265
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 93 GHFARDCKEEADRCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIARNC--PEG 248
G F + RC C H + EC +P ++ C NC GHI+++C P+G
Sbjct: 417 GTFRPEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
Score = 35.1 bits (77), Expect = 0.036
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISREC 373
C NC H S CPD C CG GHIS++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 93 GHFARDCKEEADRCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIARNC--PEG 248
G F + RC C H + EC +P ++ C NC GHI+++C P+G
Sbjct: 417 GTFRPEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
Score = 35.1 bits (77), Expect = 0.036
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISREC 373
C NC H S CPD C CG GHIS++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 132 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 251
CY+C GH++++C QS N KT H N E G
Sbjct: 313 CYKCKVVGHVSKDCPQSSTNSGVTN-RKTEHSEVNTLEVG 351
Score = 31.1 bits (67), Expect = 0.58
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 192 PSCYNCNKTGHIARNCPE 245
P CY C GH++++CP+
Sbjct: 311 PYCYKCKVVGHVSKDCPQ 328
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 170 VRTEPGRAVVLQLQQ-DGPHRTELSRGGAKSATQTCYNCNKSGHISRNCPDGT 325
+ P R ++ Q D + + SR G CY C GH+S++CP +
Sbjct: 279 ITVTPARHPKFEVNQVDADDKKKDSRKG-NYRPPYCYKCKVVGHVSKDCPQSS 330
>Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical
protein T23F6.1 protein.
Length = 160
Score = 31.5 bits (68), Expect = 0.44
Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = -3
Query: 273 QVCVADFAPPRDSSVRCG-PSCCSCNTTARPGSVRTRALCAPCRYICSNGQPLPCNPSQS 97
Q C PP CG P C C V T C C+ +C+N C
Sbjct: 76 QTCCPSAPPP----CSCGTPGCMQCVQQTVLVPVTTTTCCKCCQPVCTNA----CTNGGG 127
Query: 96 VLCGCT 79
CGCT
Sbjct: 128 CSCGCT 133
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 31.5 bits (68), Expect = 0.44
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 159 IARECAQ--SPDEPSCYNCNKTGHIARNCPE 245
+ R+C Q +P + C+ C++ GH +CP+
Sbjct: 1342 LLRKCNQGSAPTDRQCHQCHRIGHFVESCPQ 1372
Score = 31.5 bits (68), Expect = 0.44
Identities = 26/84 (30%), Positives = 35/84 (41%)
Frame = +3
Query: 9 RECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPD 188
R+C QG + +RQ C +C+R GHF C + A AR+ S
Sbjct: 1344 RKCNQGSAPT-----DRQ---CHQCHRIGHFVESCPQRA--------LAKEARKRFGSNS 1387
Query: 189 EPSCYNCNKTGHIARNCPEGGRSL 260
S Y N +G +N EGG L
Sbjct: 1388 TNSSYRSNDSGRGFKNGEEGGDRL 1411
>Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical
protein K10D3.4 protein.
Length = 922
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 206 LQQDGPHRTELSRGGAKSATQTCYNCNKSGHISRNCPDGTKTCY 337
L + P T +++ G S C N +G +S CPDG TCY
Sbjct: 682 LSEACPPGTVVAKDGDGSRLVQCSNPGGNGRVSGGCPDG-YTCY 724
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 30.3 bits (65), Expect = 1.0
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Frame = +3
Query: 9 RECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPD 188
R C Q + + GF K C+ G DC +++ +C C G R+C Q
Sbjct: 825 RRCDQCAIGTY--GFGPSGCKKCDCDAVGSLGNDCDKQSGQCV-CREKGIYGRQCNQCQP 881
Query: 189 E----PSCYNCNKTGH 224
P C C H
Sbjct: 882 GFWGFPECRTCQCNDH 897
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Frame = -3
Query: 252 APPRDSSVRCGPSC---CS--CNTTARPGSVRTRALCAPCRYICSNGQPLPCNPSQSVLC 88
A P+ S +C P C C C T A C C+ + C P Q+ C
Sbjct: 253 ASPQTS--QCVPQCQQQCQQQCQTRTTASQQCAPACSTSCNQSCNQPAQMACQPMQNSQC 310
Query: 87 GC 82
GC
Sbjct: 311 GC 312
>U80847-7|AAO91744.1| 778|Caenorhabditis elegans Hypothetical
protein C17H11.6c protein.
Length = 778
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 314 PD-GTKTCYVCGKPGHISRECDEAR 385
PD GT CY C + H ++ CDEAR
Sbjct: 198 PDCGTLFCYHCKREWHSNQTCDEAR 222
>U80847-6|AAK68190.1| 796|Caenorhabditis elegans Hypothetical
protein C17H11.6b protein.
Length = 796
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 314 PD-GTKTCYVCGKPGHISRECDEAR 385
PD GT CY C + H ++ CDEAR
Sbjct: 198 PDCGTLFCYHCKREWHSNQTCDEAR 222
>U80847-5|AAK68189.1| 793|Caenorhabditis elegans Hypothetical
protein C17H11.6a protein.
Length = 793
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 314 PD-GTKTCYVCGKPGHISRECDEAR 385
PD GT CY C + H ++ CDEAR
Sbjct: 198 PDCGTLFCYHCKREWHSNQTCDEAR 222
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Frame = +3
Query: 132 CYRCNGTGHIARECAQSPDE-------PSCYNCNKTGHIARNCPE 245
C C G C+ +P P C+ C + GHI+ CP+
Sbjct: 581 CAECKQVGGHEPSCSLAPKTWKRERPPPQCFTCGEMGHISTYCPK 625
>Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical
protein F28F8.7 protein.
Length = 464
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTKTCYVC 343
C NCNK+ PD TK C +C
Sbjct: 302 CQNCNKALKYYDPIPDDTKLCLIC 325
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 272 CYNCNKSGHISRNCP 316
C++C + GHISR CP
Sbjct: 170 CFHCQEHGHISRMCP 184
Score = 28.3 bits (60), Expect = 4.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 198 CYNCNKTGHIARNCPE 245
C++C + GHI+R CP+
Sbjct: 170 CFHCQEHGHISRMCPK 185
>AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical
protein Y51H4A.26 protein.
Length = 107
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +3
Query: 102 ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGH----IARNCPE 245
A+ C+ D + Y+ GH R+C D P Y C K G I +NCP+
Sbjct: 37 AKKCENYFDCQQYQTCIFGHCVRKCTSERDCPLGYICFKNGDGQRCIKKNCPK 89
>AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical
protein Y73B3A.13 protein.
Length = 418
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 272 CYNCNKSGHISRNCPDGTKTCYVC 343
C NCNK+ PD TK C +C
Sbjct: 281 CQNCNKALKYYDPIPDDTKLCLIC 304
>U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical
protein C28H8.9a protein.
Length = 372
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 117 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 224
E + C C+GT + + D SC++C ++GH
Sbjct: 252 EISTSCDFCSGTAFMNKNTKLPEDLVSCHDCGRSGH 287
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 57 RQREKCFKCNRTGHFARDCKEEA 125
R + +C C GH AR+CK++A
Sbjct: 571 RFKGQCHYCKNVGHMARNCKKKA 593
Score = 27.1 bits (57), Expect = 9.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 198 CYNCNKTGHIARNC 239
C+ C GH+ARNC
Sbjct: 576 CHYCKNVGHMARNC 589
>Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical
protein F36F2.3b protein.
Length = 363
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 248 GAKSATQTCYNCNKSGHISRNCP 316
G T TC C++ GH +NCP
Sbjct: 150 GPPPPTYTCNRCSQPGHWYKNCP 172
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 248 GAKSATQTCYNCNKSGHISRNCP 316
G T TC C++ GH +NCP
Sbjct: 150 GPPPPTYTCNRCSQPGHWYKNCP 172
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 150 CRYICSNGQPLPCNPSQSVLCGC 82
CR C G PCN + SV+C C
Sbjct: 509 CREKCHEGPCPPCNLNTSVICRC 531
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 332 CYVCGKPGHISREC 373
CY CGK GH + EC
Sbjct: 411 CYYCGKRGHTANEC 424
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 320 RRDSCGRCGRTCCSYSRSASQTSP 249
RR CGR +CCS S S S P
Sbjct: 31 RRQCCGRSSSSCCSSSSSNSYCIP 54
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 283 QQVRPHLPQLSRRHQDVL-RVRQARPHLARVRRGAELAAATLSPLQSTMYIMMPRTDDKQ 459
++V LP SR +DV+ + RQA P + RRG +++LS L S + M + +++
Sbjct: 662 EEVTEKLPVESRDWRDVINQQRQAAPGNSADRRGIAATSSSLSNLPSYINRRMEKERERE 721
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = +3
Query: 138 RCNGTGHIARECAQSPDEP--SCYNCNKTGHIARNCPEGGRSL 260
RCNG EC+ DE SC C T H C E R L
Sbjct: 475 RCNGVA----ECSDGSDEHKCSCQECLGTHHDTYMCSESNRCL 513
>AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical
protein Y48B6A.3 protein.
Length = 892
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 314 PDGTKTCYVCGKPGHISRECDEARN 388
P+ + C +CG+ GH +EC A N
Sbjct: 258 PNQPRACDLCGQYGHELKECRGAEN 282
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
protein W05B2.2 protein.
Length = 1278
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 571 TRPSIYKSTVEPHSSVCGADALCICTVIGY 482
+RP I++ST EP + C DA C T Y
Sbjct: 777 SRPEIWQSTAEPRA--CSRDAQCPSTTSCY 804
>Z79600-7|CAI79194.1| 173|Caenorhabditis elegans Hypothetical
protein F59C6.12 protein.
Length = 173
Score = 27.1 bits (57), Expect = 9.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 189 EPSCYNCNKTGHIARNCPEGGRSL 260
+PS + N +G + CP GG++L
Sbjct: 115 QPSSLSMNSSGRVYHKCPIGGKAL 138
>U80955-3|AAM97944.1| 95|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform a protein.
Length = 95
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +3
Query: 60 QREKCFKCNRTGHFARDCKEEADR----CYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 227
+ KC KC ++ + A + + C++CN + C +P E Y C K H
Sbjct: 7 EHPKCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELY-C-KQCHG 64
Query: 228 ARNCPEG 248
+ P+G
Sbjct: 65 RKFGPKG 71
>U80955-1|AAM97945.1| 113|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform b protein.
Length = 113
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +3
Query: 60 QREKCFKCNRTGHFARDCKEEADR----CYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 227
+ KC KC ++ + A + + C++CN + C +P E Y C K H
Sbjct: 7 EHPKCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELY-C-KQCHG 64
Query: 228 ARNCPEG 248
+ P+G
Sbjct: 65 RKFGPKG 71
>U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical
protein C53B7.2 protein.
Length = 195
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = -3
Query: 225 CGPSCCSCNTTARPGSVRTRALCAPCRYICSNGQPLP---CNPSQSVLC 88
C P+C S N R R C P ++ Q +P C +QS+ C
Sbjct: 42 CPPTCESPNPQCRVDCTRPSCTCLPGHVYSNSRQCIPANSCYQTQSLRC 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,763,571
Number of Sequences: 27780
Number of extensions: 270861
Number of successful extensions: 1466
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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