Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00947X
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   2.1  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   3.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   5.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.7  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +3

Query: 192 PSCYNCNKTGHIARNCPEGGRS 257
           P C  C    H  + CP+G ++
Sbjct: 76  PICGACGDIAHTVKYCPKGTKN 97



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 272 CYNCNKSGHISRNCPDGTK 328
           C  C    H  + CP GTK
Sbjct: 78  CGACGDIAHTVKYCPKGTK 96


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 354 PGLPHT*HVLVPSGQLREMWPDLLQL*QVCVADFAPPRDSSV 229
           PGL      L+ SGQL  +  D     +   A+  PPR +SV
Sbjct: 56  PGLAAVLQYLIRSGQLNIISSDHDDSDEEYAANSQPPRITSV 97


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 304 PQLSRRHQDVLRVRQARPHLARVRR 378
           P+L+ R   V     ARPH + V R
Sbjct: 110 PELTNRKSVVFHHDNARPHTSLVTR 134


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +2

Query: 200 LQLQQDGPHRTELSRGGAKSATQTCYNCNKSGHIS 304
           +++ +DG + + L+ G         YNC ++  I+
Sbjct: 147 VEVSRDGKYLSTLAPGKVLGELAILYNCKRTATIT 181


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 304 PQLSRRHQDVLRVRQARPHLARVRR 378
           P+L+ R   V     ARPH + V R
Sbjct: 232 PELTNRKGVVFHHDNARPHTSLVTR 256


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 344 GKPGHISRECDEARN*PQPPCLPYNQL 424
           G PGH        ++ P P   PYN++
Sbjct: 60  GVPGHHYGAAGSQQDMPYPRFPPYNRM 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,419
Number of Sequences: 438
Number of extensions: 3141
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)