Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00946
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0208 + 15549411-15549740                                         29   4.1  
04_04_0682 - 27229936-27231087,27231954-27232337                       28   7.2  
06_01_0958 - 7380021-7380401,7380771-7381046,7381184-7381582           28   9.5  

>12_02_0208 + 15549411-15549740
          Length = 109

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 35  TLYLLANILLRFIQQTFSCVYIFLTLYSVESLI*MFFFFKYIRNR*LKLVVTII 196
           TL+ L  +LL FI  +  C Y+ +  YS  S++ +  F     +  +  ++TII
Sbjct: 36  TLFQLEVLLLMFIAMSTLCHYVIVDAYSTLSMLMLITFTTITGSNPIVNIMTII 89


>04_04_0682 - 27229936-27231087,27231954-27232337
          Length = 511

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 373 LLKYFYNTESAEFSNDFYSVLKSR-CKTIKSY*SILNRYSF 492
           LL  F     AE ++   +VL+SR C+  + Y S++N Y+F
Sbjct: 468 LLANFKEKNDAESADRLMNVLRSRRCEENEEYKSLINTYAF 508


>06_01_0958 - 7380021-7380401,7380771-7381046,7381184-7381582
          Length = 351

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 189 VTTNFNHRFRIYLKKKNIYIRDSTEYNVKKM 97
           V    N R ++YL ++NIYI  +T  +V K+
Sbjct: 134 VPEELNGRKKVYLNEENIYITKTTPQSVVKL 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,098,795
Number of Sequences: 37544
Number of extensions: 224437
Number of successful extensions: 331
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)