Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00945
(551 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellu... 128 1e-28
UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellul... 113 2e-24
UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4... 113 3e-24
UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellu... 89 6e-17
UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Ze... 85 1e-15
UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17; Archa... 82 1e-14
UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4; ce... 67 2e-10
UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1; ... 56 5e-07
UniRef50_Q8BGG2 Cluster: Adult male spinal cord cDNA, RIKEN full... 55 1e-06
UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;... 53 4e-06
UniRef50_UPI00015B40B9 Cluster: PREDICTED: similar to mitochondr... 48 1e-04
UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1; ... 46 4e-04
UniRef50_Q1HPJ4 Cluster: Mitochondrial ribosomal protein S12; n=... 46 6e-04
UniRef50_Q9NEH6 Cluster: EG:BACH59J11.1 protein; n=2; Bilateria|... 42 0.013
UniRef50_P10735 Cluster: 40S ribosomal protein S12, mitochondria... 42 0.013
UniRef50_UPI0000D55D7C Cluster: PREDICTED: similar to 40S riboso... 40 0.038
UniRef50_Q7SZ18 Cluster: Mrps12-prov protein; n=8; Euteleostomi|... 39 0.089
UniRef50_A5DX89 Cluster: 30S ribosomal protein S12; n=6; Sacchar... 37 0.36
UniRef50_Q9XTY5 Cluster: Putative uncharacterized protein; n=2; ... 36 0.83
UniRef50_O15235 Cluster: 28S ribosomal protein S12, mitochondria... 35 1.1
UniRef50_Q11EN9 Cluster: Putative uncharacterized protein; n=1; ... 34 1.9
UniRef50_Q4UHK0 Cluster: Putative uncharacterized protein; n=2; ... 33 4.4
UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellul... 33 5.8
UniRef50_A4LVV0 Cluster: Tetratricopeptide TPR_2 repeat protein ... 32 7.7
>UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellular
organisms|Rep: 40S ribosomal protein S23 - Homo sapiens
(Human)
Length = 143
Score = 128 bits (308), Expect = 1e-28
Identities = 57/66 (86%), Positives = 63/66 (95%)
Frame = +2
Query: 56 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 235
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74
Query: 236 IKNGKK 253
IKNGKK
Sbjct: 75 IKNGKK 80
Score = 89.0 bits (211), Expect = 6e-17
Identities = 42/44 (95%), Positives = 43/44 (97%)
Frame = +3
Query: 309 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 440
+LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 100 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 40.3 bits (90), Expect = 0.029
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +1
Query: 247 KERTAFVPRDGCLNHIEENDE 309
K+ TAFVP DGCLN IEENDE
Sbjct: 79 KKITAFVPNDGCLNFIEENDE 99
>UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellular
organisms|Rep: 40S ribosomal protein S23 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 145
Score = 113 bits (273), Expect = 2e-24
Identities = 52/77 (67%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Frame = +2
Query: 26 PRNTNGA*DVN-HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 202
PR N A + HRR RWA+ +KK +GT +K++PFGG+SHAKGIVLEK+G+E+KQPN
Sbjct: 6 PRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPN 65
Query: 203 SAIRKCVRVQLIKNGKK 253
SAIRKCVRVQLIKNGKK
Sbjct: 66 SAIRKCVRVQLIKNGKK 82
Score = 77.8 bits (183), Expect = 2e-13
Identities = 36/44 (81%), Positives = 41/44 (93%)
Frame = +3
Query: 309 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 440
+L+AGFGRKG A GDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 102 VLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
Score = 38.7 bits (86), Expect = 0.089
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 247 KERTAFVPRDGCLNHIEENDE 309
K+ TAFVP DGCLN ++ENDE
Sbjct: 81 KKVTAFVPNDGCLNFVDENDE 101
>UniRef50_Q8S6I4 Cluster: Putative 40s ribosomal protein S23; n=4;
Oryza sativa|Rep: Putative 40s ribosomal protein S23 -
Oryza sativa (Rice)
Length = 301
Score = 113 bits (271), Expect = 3e-24
Identities = 49/65 (75%), Positives = 56/65 (86%)
Frame = +2
Query: 59 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 238
HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+
Sbjct: 87 HRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145
Query: 239 KNGKK 253
KNGKK
Sbjct: 146 KNGKK 150
Score = 32.3 bits (70), Expect = 7.7
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +1
Query: 247 KERTAFVPRDGCLNHIEEN 303
K+ AFVP DGCLN I+EN
Sbjct: 149 KKIAAFVPNDGCLNFIKEN 167
>UniRef50_Q0W8G5 Cluster: 30S ribosomal protein S12P; n=20; cellular
organisms|Rep: 30S ribosomal protein S12P - Uncultured
methanogenic archaeon RC-I
Length = 142
Score = 89.0 bits (211), Expect = 6e-17
Identities = 40/67 (59%), Positives = 53/67 (79%)
Frame = +2
Query: 53 VNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 232
V+ R+ RW+D+++ + + KA+P GA AKGIVLEKVGVEAKQPNSAIRKC+R+Q
Sbjct: 12 VHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQ 71
Query: 233 LIKNGKK 253
LIKNG++
Sbjct: 72 LIKNGRQ 78
Score = 42.3 bits (95), Expect = 0.007
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +3
Query: 327 GRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 434
GR G + GDIPGVRF+V KV +VSL + K+++P
Sbjct: 105 GRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140
>UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Zea
mays|Rep: Putative 40S ribosomal protein - Zea mays
(Maize)
Length = 309
Score = 85.0 bits (201), Expect = 1e-15
Identities = 38/44 (86%), Positives = 43/44 (97%)
Frame = +3
Query: 309 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 440
+L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 226 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 269
>UniRef50_Q8ZYQ4 Cluster: 30S ribosomal protein S12P; n=17;
Archaea|Rep: 30S ribosomal protein S12P - Pyrobaculum
aerophilum
Length = 147
Score = 81.8 bits (193), Expect = 1e-14
Identities = 37/63 (58%), Positives = 49/63 (77%)
Frame = +2
Query: 62 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 241
R++ RW D +K+ +G K +P GA A+GIVLEKVGVEA++PN+A+RKCVRVQL+K
Sbjct: 20 RQKFRWNDVTYKRKMLGLVEKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVRVQLVK 79
Query: 242 NGK 250
NGK
Sbjct: 80 NGK 82
Score = 50.4 bits (115), Expect = 3e-05
Identities = 21/36 (58%), Positives = 30/36 (83%)
Frame = +3
Query: 327 GRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 434
G +G ++GDIPGVRFKV+KV VSL A+++ KK++P
Sbjct: 110 GPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145
>UniRef50_A3H7W0 Cluster: Protein splicing (Intein) site; n=4;
cellular organisms|Rep: Protein splicing (Intein) site -
Caldivirga maquilingensis IC-167
Length = 661
Score = 67.3 bits (157), Expect = 2e-10
Identities = 31/61 (50%), Positives = 44/61 (72%)
Frame = +2
Query: 62 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 241
R++ RW+D ++KK +G K +P GA A+GIVLEKVGVEA++PN+A+RKCV +
Sbjct: 20 RQKFRWSDIQYKKRALGFIKKYDPLEGAPMARGIVLEKVGVEARKPNAAVRKCVTPDTLI 79
Query: 242 N 244
N
Sbjct: 80 N 80
Score = 46.0 bits (104), Expect = 6e-04
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +3
Query: 327 GRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 434
G +G A GD+PGVRFKV KV VSL A+ KK++P
Sbjct: 624 GPEGRAYGDLPGVRFKVTKVNGVSLKAILLGKKQKP 659
>UniRef50_Q5AAQ9 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 102
Score = 56.0 bits (129), Expect = 5e-07
Identities = 27/50 (54%), Positives = 31/50 (62%)
Frame = -2
Query: 448 YTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSIRRF 299
Y YDLG SFFS +A ++T T TTL TPG+SP A PL P PA F
Sbjct: 3 YIYDLGFSFFSFHKANKETPETLTTLNLTPGISPLALPLLPKPANKTSSF 52
Score = 46.8 bits (106), Expect = 3e-04
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = -3
Query: 270 GDECGPFFPFLMSCTRTHLRMAELGCLASTPTFSRTMPFA 151
G + F PFL++ T TH +AE GCL S P FS+T+P A
Sbjct: 63 GTKAVTFLPFLINWTSTHFSIAEFGCLDSIPIFSKTIPLA 102
>UniRef50_Q8BGG2 Cluster: Adult male spinal cord cDNA, RIKEN
full-length enriched library, clone:A330001L23
product:hypothetical protein, full insert sequence; n=8;
Euarchontoglires|Rep: Adult male spinal cord cDNA, RIKEN
full-length enriched library, clone:A330001L23
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 154
Score = 55.2 bits (127), Expect = 1e-06
Identities = 28/64 (43%), Positives = 37/64 (57%)
Frame = -2
Query: 250 LSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSL 71
L VLNEL+ DA DGR+ L F + ++LC+R T +R+ L VGFL FV P L
Sbjct: 32 LPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGTPKRIGLQGCAQVGFLVLFVMPLL 91
Query: 70 FTTV 59
+V
Sbjct: 92 VPSV 95
>UniRef50_UPI00004CC6C0 Cluster: PREDICTED: hypothetical protein;
n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
Mus musculus
Length = 143
Score = 53.2 bits (122), Expect = 4e-06
Identities = 27/64 (42%), Positives = 36/64 (56%)
Frame = -2
Query: 250 LSVLNELYTDAFADGRVGLLSFYTNFLEDDALCVRCTTERVSLPFRTHVGFLEFFVRPSL 71
L VLNEL+ DA DGR+ L F + ++LC+R +R+ L VGFL FV P L
Sbjct: 63 LPVLNELHPDALPDGRIWLFGLNPYFFQHNSLCMRGAPKRIGLQGCAQVGFLVLFVMPLL 122
Query: 70 FTTV 59
+V
Sbjct: 123 VPSV 126
Score = 38.3 bits (85), Expect = 0.12
Identities = 14/31 (45%), Positives = 26/31 (83%)
Frame = -1
Query: 413 VESEERHVGYFYHLKTNSGNVTDGVTFTTES 321
++S++R++GYF HLK +S ++T +TF+T+S
Sbjct: 9 LQSQQRNIGYFNHLKEDSRDITYSMTFSTKS 39
>UniRef50_UPI00015B40B9 Cluster: PREDICTED: similar to mitochondrial
ribosomal protein S12; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to mitochondrial ribosomal protein
S12 - Nasonia vitripennis
Length = 173
Score = 48.0 bits (109), Expect = 1e-04
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +2
Query: 128 NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 253
NPF GA AKG+VL+ + + K+PNSA RKCV V+L NGK+
Sbjct: 83 NPFNGAPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-SNGKE 123
>UniRef50_A3B198 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 128
Score = 46.4 bits (105), Expect = 4e-04
Identities = 19/25 (76%), Positives = 23/25 (92%)
Frame = +3
Query: 309 ILVAGFGRKGHAVGDIPGVRFKVVK 383
+L++GFG KGHAVGDI GVRF+VVK
Sbjct: 69 VLISGFGHKGHAVGDIRGVRFEVVK 93
>UniRef50_Q1HPJ4 Cluster: Mitochondrial ribosomal protein S12; n=3;
Coelomata|Rep: Mitochondrial ribosomal protein S12 -
Bombyx mori (Silk moth)
Length = 111
Score = 46.0 bits (104), Expect = 6e-04
Identities = 24/50 (48%), Positives = 32/50 (64%)
Frame = +2
Query: 104 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 253
H+ + NP G AKG+VL+ V + K+PNSA RKCV V+L NGK+
Sbjct: 13 HIKKRKSRNPLNGNPFAKGVVLKTVIKKPKKPNSANRKCVLVRL-SNGKE 61
>UniRef50_Q9NEH6 Cluster: EG:BACH59J11.1 protein; n=2;
Bilateria|Rep: EG:BACH59J11.1 protein - Drosophila
melanogaster (Fruit fly)
Length = 154
Score = 41.5 bits (93), Expect = 0.013
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +2
Query: 104 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 253
H+ T+ P G AKG+VL+ + + K+PNSA RKCV V+L GK+
Sbjct: 56 HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-STGKE 104
>UniRef50_P10735 Cluster: 40S ribosomal protein S12, mitochondrial
precursor; n=7; Coelomata|Rep: 40S ribosomal protein
S12, mitochondrial precursor - Drosophila melanogaster
(Fruit fly)
Length = 140
Score = 41.5 bits (93), Expect = 0.013
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +2
Query: 104 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 253
H+ T+ P G AKG+VL+ + + K+PNSA RKCV V+L GK+
Sbjct: 42 HIKTRPPRQPLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRL-STGKE 90
>UniRef50_UPI0000D55D7C Cluster: PREDICTED: similar to 40S ribosomal
protein S12, mitochondrial precursor (MT-RPS12)
(Technical knockout locus protein); n=2; Coelomata|Rep:
PREDICTED: similar to 40S ribosomal protein S12,
mitochondrial precursor (MT-RPS12) (Technical knockout
locus protein) - Tribolium castaneum
Length = 156
Score = 39.9 bits (89), Expect = 0.038
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +2
Query: 104 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 253
H+ + P G KG+VL+ + + K+PNSA RKCV V+L NGK+
Sbjct: 60 HIKERKPRRPLDGKPFMKGVVLKTLIKKPKKPNSANRKCVLVRL-SNGKE 108
>UniRef50_Q7SZ18 Cluster: Mrps12-prov protein; n=8;
Euteleostomi|Rep: Mrps12-prov protein - Xenopus laevis
(African clawed frog)
Length = 150
Score = 38.7 bits (86), Expect = 0.089
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +2
Query: 131 PFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 253
P G KG+VL+ + + K+PNSA RKC RV+L NGK+
Sbjct: 62 PTFGCPQLKGVVLKTMIRKPKKPNSANRKCARVRL-SNGKE 101
>UniRef50_A5DX89 Cluster: 30S ribosomal protein S12; n=6;
Saccharomycetales|Rep: 30S ribosomal protein S12 -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 183
Score = 36.7 bits (81), Expect = 0.36
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = +2
Query: 155 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 250
+G++L + ++ K+PNSA+RKC RV+L NGK
Sbjct: 90 RGVILRIMILKPKKPNSALRKCARVRL-SNGK 120
>UniRef50_Q9XTY5 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 157
Score = 35.5 bits (78), Expect = 0.83
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2
Query: 140 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 235
G SH KGIVL+ V K+PNS RKC V+L
Sbjct: 72 GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103
>UniRef50_O15235 Cluster: 28S ribosomal protein S12, mitochondrial
precursor; n=13; Deuterostomia|Rep: 28S ribosomal
protein S12, mitochondrial precursor - Homo sapiens
(Human)
Length = 138
Score = 35.1 bits (77), Expect = 1.1
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 122 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 235
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>UniRef50_Q11EN9 Cluster: Putative uncharacterized protein; n=1;
Mesorhizobium sp. BNC1|Rep: Putative uncharacterized
protein - Mesorhizobium sp. (strain BNC1)
Length = 338
Score = 34.3 bits (75), Expect = 1.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 255 PFFPFLMSCTRTHLRMAELGCLASTPTFSRTMPFA 151
P P + R+H ++ E+ C + P +S T+PFA
Sbjct: 237 PALPTAFNSARSHNKILEIACFGAAPVYSSTVPFA 271
>UniRef50_Q4UHK0 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 428
Score = 33.1 bits (72), Expect = 4.4
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 265 RMRSFLSVLNELYTDAFADGRVGLL-SFYTNFLEDDALCVRCTTERVSLPFRTHVG 101
R R L + Y F LL SFYT L D+++C R TT+ + + +G
Sbjct: 293 RSRDVLDTIKNYYNKLFFKDNYNLLYSFYTLVLNDNSICPRKTTDELDSIIQAKLG 348
>UniRef50_O70089 Cluster: 30S ribosomal protein S12; n=35; cellular
organisms|Rep: 30S ribosomal protein S12 - Aquifex
aeolicus
Length = 128
Score = 32.7 bits (71), Expect = 5.8
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +2
Query: 116 KWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNG 247
K KA G +G+ + V K+PNSA+RK RV+L NG
Sbjct: 18 KSKAPALQGCPQKRGVCVRVYTVTPKKPNSALRKVARVRL-SNG 60
>UniRef50_A4LVV0 Cluster: Tetratricopeptide TPR_2 repeat protein
precursor; n=1; Geobacter bemidjiensis Bem|Rep:
Tetratricopeptide TPR_2 repeat protein precursor -
Geobacter bemidjiensis Bem
Length = 596
Score = 32.3 bits (70), Expect = 7.7
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 135 KGLAFHFVPMWAFLNSLSAHRCSRRWFTSYAPFVFLGVYPFG*H 4
+GL+F + WAF++++S H W + + F G+ P G H
Sbjct: 64 EGLSFESIK-WAFMSNVSGHWHPLTWLSLMMDYQFFGLDPMGYH 106
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,078,284
Number of Sequences: 1657284
Number of extensions: 12151634
Number of successful extensions: 26597
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 25776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26593
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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