Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00945
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 117 7e-27
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 117 7e-27
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 113 1e-25
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 46 2e-05
11_04_0275 + 15685501-15685663,15685869-15685994,15687015-15687166 29 3.3
08_01_0401 - 3569545-3570003 28 4.3
04_01_0440 + 5746474-5746662,5746895-5747251 28 4.3
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243... 27 7.5
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 117 bits (281), Expect = 7e-27
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = +2
Query: 59 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 238
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 239 KNGKK 253
KNGKK
Sbjct: 75 KNGKK 79
Score = 85.0 bits (201), Expect = 4e-17
Identities = 38/44 (86%), Positives = 43/44 (97%)
Frame = +3
Query: 309 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 440
+L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 99 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +1
Query: 247 KERTAFVPRDGCLNHIEENDE 309
K+ AFVP DGCLN IEENDE
Sbjct: 78 KKIAAFVPNDGCLNFIEENDE 98
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 117 bits (281), Expect = 7e-27
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = +2
Query: 59 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 238
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 239 KNGKK 253
KNGKK
Sbjct: 75 KNGKK 79
Score = 117 bits (281), Expect = 7e-27
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = +2
Query: 59 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 238
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 186 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 244
Query: 239 KNGKK 253
KNGKK
Sbjct: 245 KNGKK 249
Score = 85.0 bits (201), Expect = 4e-17
Identities = 38/44 (86%), Positives = 43/44 (97%)
Frame = +3
Query: 309 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 440
+L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 269 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 81.4 bits (192), Expect = 4e-16
Identities = 36/42 (85%), Positives = 41/42 (97%)
Frame = +3
Query: 309 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 434
+L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 99 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +1
Query: 247 KERTAFVPRDGCLNHIEENDE 309
K+ AFVP DGCLN IEENDE
Sbjct: 78 KKIAAFVPNDGCLNFIEENDE 98
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +1
Query: 247 KERTAFVPRDGCLNHIEENDE 309
K+ AFVP DGCLN IEENDE
Sbjct: 248 KKIAAFVPNDGCLNFIEENDE 268
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 113 bits (271), Expect = 1e-25
Identities = 49/65 (75%), Positives = 56/65 (86%)
Frame = +2
Query: 59 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 238
HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+
Sbjct: 87 HRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145
Query: 239 KNGKK 253
KNGKK
Sbjct: 146 KNGKK 150
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 247 KERTAFVPRDGCLNHIEEND 306
K+ AFVP DGCLN I+EN+
Sbjct: 149 KKIAAFVPNDGCLNFIKENE 168
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/25 (76%), Positives = 23/25 (92%)
Frame = +3
Query: 309 ILVAGFGRKGHAVGDIPGVRFKVVK 383
+L++GFG KGHAVGDI GVRF+VVK
Sbjct: 69 VLISGFGHKGHAVGDIRGVRFEVVK 93
>11_04_0275 + 15685501-15685663,15685869-15685994,15687015-15687166
Length = 146
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 29 RNTNGA*DVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 193
RNT+ A D HRR Q K K+ G K K G++ A + ++VG+E K
Sbjct: 63 RNTDEAADAEHRRPQ--GQKAAKEQRKG-KGKGKLGKGSNAAARLDTDRVGLEGK 114
>08_01_0401 - 3569545-3570003
Length = 152
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/66 (25%), Positives = 24/66 (36%)
Frame = +2
Query: 23 TPRNTNGA*DVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 202
TP+ T G +H R + A E ++ W A P KGI + +
Sbjct: 78 TPKFTGGVLGASHMRVEAAAVAELREWEKTRSWIAGPAEDRRRRKGIAMVATTAREDEGV 137
Query: 203 SAIRKC 220
S R C
Sbjct: 138 SGRRNC 143
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 73 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 171
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>03_01_0309 -
2432395-2433271,2433494-2434495,2434538-2435073,
2435579-2435716,2436050-2436148,2436278-2436346,
2436968-2437063
Length = 938
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = -3
Query: 471 TAGHLSQCTPMILVAPFSLCRERGET----RWLLLPP*NELRECHRRRDLYDRI 322
T GH+++ P+ L LCR E + ++ P E E H+ DL I
Sbjct: 138 TTGHVAKAAPVFLDETIKLCRVYSEAAKSDQCIMSMPKEETTEEHKETDLTSNI 191
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,556
Number of Sequences: 37544
Number of extensions: 357658
Number of successful extensions: 846
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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