Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00945
(551 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 128 2e-29
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 128 2e-29
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 128 2e-29
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 87 3e-17
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 35 0.17
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 35 0.17
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.17
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.17
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.17
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 35 0.17
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein. 30 6.2
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 128 bits (308), Expect = 2e-29
Identities = 57/66 (86%), Positives = 63/66 (95%)
Frame = +2
Query: 56 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 235
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74
Query: 236 IKNGKK 253
IKNGKK
Sbjct: 75 IKNGKK 80
Score = 89.0 bits (211), Expect = 1e-17
Identities = 42/44 (95%), Positives = 43/44 (97%)
Frame = +3
Query: 309 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 440
+LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 100 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +1
Query: 247 KERTAFVPRDGCLNHIEENDE 309
K+ TAFVP DGCLN IEENDE
Sbjct: 79 KKITAFVPNDGCLNFIEENDE 99
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 128 bits (308), Expect = 2e-29
Identities = 57/66 (86%), Positives = 63/66 (95%)
Frame = +2
Query: 56 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 235
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74
Query: 236 IKNGKK 253
IKNGKK
Sbjct: 75 IKNGKK 80
Score = 89.0 bits (211), Expect = 1e-17
Identities = 42/44 (95%), Positives = 43/44 (97%)
Frame = +3
Query: 309 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 440
+LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 100 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +1
Query: 247 KERTAFVPRDGCLNHIEENDE 309
K+ TAFVP DGCLN IEENDE
Sbjct: 79 KKITAFVPNDGCLNFIEENDE 99
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 128 bits (308), Expect = 2e-29
Identities = 57/66 (86%), Positives = 63/66 (95%)
Frame = +2
Query: 56 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 235
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74
Query: 236 IKNGKK 253
IKNGKK
Sbjct: 75 IKNGKK 80
Score = 89.0 bits (211), Expect = 1e-17
Identities = 42/44 (95%), Positives = 43/44 (97%)
Frame = +3
Query: 309 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 440
+LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 100 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +1
Query: 247 KERTAFVPRDGCLNHIEENDE 309
K+ TAFVP DGCLN IEENDE
Sbjct: 79 KKITAFVPNDGCLNFIEENDE 99
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 87.4 bits (207), Expect = 3e-17
Identities = 41/43 (95%), Positives = 42/43 (97%)
Frame = +3
Query: 309 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 437
+LVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 17 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
Score = 35.5 bits (78), Expect = 0.12
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +1
Query: 262 FVPRDGCLNHIEENDE 309
FVP DGCLN IEENDE
Sbjct: 1 FVPNDGCLNFIEENDE 16
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.17
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 122 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 235
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.17
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 122 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 235
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.17
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 122 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 235
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.17
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 122 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 235
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.17
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 122 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 235
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.17
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 122 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 235
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
Length = 1332
Score = 29.9 bits (64), Expect = 6.2
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 100 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 228
SPHG +M G P RP ES+C PQ RPC
Sbjct: 37 SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,287,688
Number of Sequences: 237096
Number of extensions: 1907944
Number of successful extensions: 5843
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5843
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5477474182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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