Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00945
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   132   2e-31
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    36   0.026
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p...    27   9.0  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    27   9.0  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    27   9.0  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    27   9.0  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  132 bits (318), Expect = 2e-31
 Identities = 57/65 (87%), Positives = 63/65 (96%)
 Frame = +2

Query: 59  HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 238
           HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLI
Sbjct: 16  HRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLI 75

Query: 239 KNGKK 253
           KNGKK
Sbjct: 76  KNGKK 80



 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 36/44 (81%), Positives = 41/44 (93%)
 Frame = +3

Query: 309 ILVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 440
           +LV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KKERPRS
Sbjct: 100 VLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1

Query: 247 KERTAFVPRDGCLNHIEENDE 309
           K+ TAFVP DGCLN +EENDE
Sbjct: 79  KKITAFVPNDGCLNFVEENDE 99


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +2

Query: 140 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 235
           G SH KGIVL+ V    K+PNS  RKC  V+L
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 253 RTAFVPRDGCLNHIEEN 303
           RT FVP+DG LN I+EN
Sbjct: 652 RTPFVPKDGVLNVIDEN 668


>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
           protein 2, isoform a protein.
          Length = 1538

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = -3

Query: 198 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 40
           GC  S   F + +        K   F++ V    FLN+    S H    +WFT    YA 
Sbjct: 366 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 425

Query: 39  FVFLGVY 19
           FVFLG++
Sbjct: 426 FVFLGIF 432


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
           protein 2, isoform c protein.
          Length = 1926

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = -3

Query: 198 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 40
           GC  S   F + +        K   F++ V    FLN+    S H    +WFT    YA 
Sbjct: 366 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 425

Query: 39  FVFLGVY 19
           FVFLG++
Sbjct: 426 FVFLGIF 432


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
           protein 2, isoform b protein.
          Length = 2027

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = -3

Query: 198 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 40
           GC  S   F + +        K   F++ V    FLN+    S H    +WFT    YA 
Sbjct: 500 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 559

Query: 39  FVFLGVY 19
           FVFLG++
Sbjct: 560 FVFLGIF 566


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
           activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = -3

Query: 198 GCLASTPTFSRTMPFA*DAPPKGLAFHF-VPMWAFLNSL---SAHRCSRRWFTS---YAP 40
           GC  S   F + +        K   F++ V    FLN+    S H    +WFT    YA 
Sbjct: 500 GCCHSVGKFIKQLRIQIRIMVKTQIFYWSVITLVFLNTCCVASEHYGQPQWFTDFLKYAE 559

Query: 39  FVFLGVY 19
           FVFLG++
Sbjct: 560 FVFLGIF 566


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,483,295
Number of Sequences: 27780
Number of extensions: 288361
Number of successful extensions: 614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)