Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00944
         (411 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal prot...   142   1e-34
X13625-1|CAB38441.1|  114|Drosophila melanogaster protein ( Dros...   142   1e-34
AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p pro...   142   1e-34
AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-P...   142   1e-34
AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-P...   142   1e-34
AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-P...   142   1e-34
AY070900-1|AAL48522.1|  463|Drosophila melanogaster RE01590p pro...    28   4.2  
AE014134-1736|AAF52836.1|  463|Drosophila melanogaster CG13126-P...    28   4.2  
U71219-1|AAC47507.1|  827|Drosophila melanogaster males-absent o...    28   5.5  
AY102685-1|AAM27514.1|  827|Drosophila melanogaster LD24203p pro...    28   5.5  
AY061244-1|AAL28792.1|  664|Drosophila melanogaster LD18373p pro...    28   5.5  
AE014298-1641|AAF48061.1|  664|Drosophila melanogaster CG11696-P...    28   5.5  
AE014298-809|AAF46095.1|  827|Drosophila melanogaster CG3025-PA ...    28   5.5  
BT021222-1|AAX33370.1|  822|Drosophila melanogaster RH55640p pro...    27   9.7  
AF305875-1|AAK55517.1| 1060|Drosophila melanogaster putative thr...    27   9.7  
AE014134-2947|AAF53680.2|  822|Drosophila melanogaster CG10333-P...    27   9.7  
AE014134-1143|AAF52425.2| 1060|Drosophila melanogaster CG11326-P...    27   9.7  

>X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal protein
           S31 protein.
          Length = 114

 Score =  142 bits (345), Expect = 1e-34
 Identities = 65/83 (78%), Positives = 72/83 (86%)
 Frame = +2

Query: 26  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 205
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 206 MFQLPKLYAKLHYCVSSPSTAKL 274
            + LPKLYAKLHYCVS    +K+
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKV 83



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +1

Query: 256 AIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 348
           AIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 78  AIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>X13625-1|CAB38441.1|  114|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for putative ribosomal
           protein S31. ).
          Length = 114

 Score =  142 bits (345), Expect = 1e-34
 Identities = 65/83 (78%), Positives = 72/83 (86%)
 Frame = +2

Query: 26  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 205
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 206 MFQLPKLYAKLHYCVSSPSTAKL 274
            + LPKLYAKLHYCVS    +K+
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKV 83



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +1

Query: 256 AIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 348
           AIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 78  AIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p
           protein.
          Length = 114

 Score =  142 bits (345), Expect = 1e-34
 Identities = 65/83 (78%), Positives = 72/83 (86%)
 Frame = +2

Query: 26  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 205
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 206 MFQLPKLYAKLHYCVSSPSTAKL 274
            + LPKLYAKLHYCVS    +K+
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKV 83



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +1

Query: 256 AIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 348
           AIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 78  AIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-PC,
           isoform C protein.
          Length = 114

 Score =  142 bits (345), Expect = 1e-34
 Identities = 65/83 (78%), Positives = 72/83 (86%)
 Frame = +2

Query: 26  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 205
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 206 MFQLPKLYAKLHYCVSSPSTAKL 274
            + LPKLYAKLHYCVS    +K+
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKV 83



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +1

Query: 256 AIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 348
           AIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 78  AIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-PB,
           isoform B protein.
          Length = 114

 Score =  142 bits (345), Expect = 1e-34
 Identities = 65/83 (78%), Positives = 72/83 (86%)
 Frame = +2

Query: 26  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 205
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 206 MFQLPKLYAKLHYCVSSPSTAKL 274
            + LPKLYAKLHYCVS    +K+
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKV 83



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +1

Query: 256 AIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 348
           AIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 78  AIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-PA,
           isoform A protein.
          Length = 114

 Score =  142 bits (345), Expect = 1e-34
 Identities = 65/83 (78%), Positives = 72/83 (86%)
 Frame = +2

Query: 26  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 205
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 206 MFQLPKLYAKLHYCVSSPSTAKL 274
            + LPKLYAKLHYCVS    +K+
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKV 83



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +1

Query: 256 AIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 348
           AIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 78  AIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AY070900-1|AAL48522.1|  463|Drosophila melanogaster RE01590p
           protein.
          Length = 463

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 113 RTARSLCISQL*RDHVHAWRVLHYGAYES 27
           R  R L I++     ++AW+ + YGAYES
Sbjct: 131 RRKRELEINKRLGQRIYAWKRIEYGAYES 159


>AE014134-1736|AAF52836.1|  463|Drosophila melanogaster CG13126-PA
           protein.
          Length = 463

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 113 RTARSLCISQL*RDHVHAWRVLHYGAYES 27
           R  R L I++     ++AW+ + YGAYES
Sbjct: 131 RRKRELEINKRLGQRIYAWKRIEYGAYES 159


>U71219-1|AAC47507.1|  827|Drosophila melanogaster males-absent on
           the first protein.
          Length = 827

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 125 KAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSSPSTA 268
           K IK +  +N++     + I D    P F+ PKL     Y V SP TA
Sbjct: 770 KMIKYWKGQNVI-CVTSKTIQDHLQLPQFKQPKLTIDTDYLVWSPQTA 816


>AY102685-1|AAM27514.1|  827|Drosophila melanogaster LD24203p
           protein.
          Length = 827

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 125 KAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSSPSTA 268
           K IK +  +N++     + I D    P F+ PKL     Y V SP TA
Sbjct: 770 KMIKYWKGQNVI-CVTSKTIQDHLQLPQFKQPKLTIDTDYLVWSPQTA 816


>AY061244-1|AAL28792.1|  664|Drosophila melanogaster LD18373p
           protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 53  RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRN 154
           +A H  G V  V+CT C R +  +++++K + R+
Sbjct: 465 KALHPDGPVAEVQCTLCGRWLRDERSLRKHLARH 498


>AE014298-1641|AAF48061.1|  664|Drosophila melanogaster CG11696-PA
           protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 53  RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRN 154
           +A H  G V  V+CT C R +  +++++K + R+
Sbjct: 465 KALHPDGPVAEVQCTLCGRWLRDERSLRKHLARH 498


>AE014298-809|AAF46095.1|  827|Drosophila melanogaster CG3025-PA
           protein.
          Length = 827

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 125 KAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSSPSTA 268
           K IK +  +N++     + I D    P F+ PKL     Y V SP TA
Sbjct: 770 KMIKYWKGQNVI-CVTSKTIQDHLQLPQFKQPKLTIDTDYLVWSPQTA 816


>BT021222-1|AAX33370.1|  822|Drosophila melanogaster RH55640p
           protein.
          Length = 822

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 277 RNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 366
           R+RS++DR  R  P+   PRD  R ++ +R
Sbjct: 52  RSRSREDRNRRRSPERQRPRDNVRERSRER 81


>AF305875-1|AAK55517.1| 1060|Drosophila melanogaster putative
           thrombospondin protein.
          Length = 1060

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 227 YAKLHYCVSSPSTAKLSGTDRRKTEESVLLPRVTSLGTC 343
           Y    +C+S P   +++GT  R   E +L      L TC
Sbjct: 399 YPPYFHCISCPMGHEVNGTSCRDMNECLLYDPCDELATC 437


>AE014134-2947|AAF53680.2|  822|Drosophila melanogaster CG10333-PA
           protein.
          Length = 822

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 277 RNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 366
           R+RS++DR  R  P+   PRD  R ++ +R
Sbjct: 52  RSRSREDRNRRRSPERQRPRDNVRERSRER 81


>AE014134-1143|AAF52425.2| 1060|Drosophila melanogaster CG11326-PA,
           isoform A protein.
          Length = 1060

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 227 YAKLHYCVSSPSTAKLSGTDRRKTEESVLLPRVTSLGTC 343
           Y    +C+S P   +++GT  R   E +L      L TC
Sbjct: 399 YPPYFHCISCPMGHEVNGTSCRDMNECLLYDPCDELATC 437


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,303,975
Number of Sequences: 53049
Number of extensions: 302704
Number of successful extensions: 1083
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1209331668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)