Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00944
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   126   8e-30
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    29   1.3  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    29   1.3  
AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical ...    27   5.3  
AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    27   7.0  
U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of ...    26   9.2  
U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of ...    26   9.2  
U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of ...    26   9.2  
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical...    26   9.2  
AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gat...    26   9.2  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  126 bits (303), Expect = 8e-30
 Identities = 57/83 (68%), Positives = 64/83 (77%)
 Frame = +2

Query: 26  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 205
           MT KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 206 MFQLPKLYAKLHYCVSSPSTAKL 274
            + LPKLY KLHYC++    +K+
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKV 83



 Score = 36.3 bits (80), Expect = 0.009
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1

Query: 256 AIHSKVVRNRSKKDRRIRTPP 318
           AIHSKVVRNRS++ RR R PP
Sbjct: 78  AIHSKVVRNRSREARRDRNPP 98


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 74  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLH--Y 244
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H  Y
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139

Query: 245 C 247
           C
Sbjct: 140 C 140


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 74  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLH--Y 244
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H  Y
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257

Query: 245 C 247
           C
Sbjct: 258 C 258


>AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical
           protein Y51A2A.11 protein.
          Length = 193

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 17  VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 118
           +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 83  IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 116


>AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical
           protein Y51A2A.7 protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 17  VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 118
           +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 150 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 183


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 252 HRHPQQSCQEQIEERQKNPYSSQE*LP*GHVTSTGSAK 365
           ++ P +S   ++ + QKN Y+S E    GH TS+ +A+
Sbjct: 378 YKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411


>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 139 LFDSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSHVSN 17
           L D LV W+  R V A     + T  L A  +  L  HVSN
Sbjct: 2   LMDGLV-WNGNREVSAGRLDTLNTFFLNALELILLIIHVSN 41


>U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform c protein.
          Length = 442

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 209 FQLPKLYAKLHYCVSSPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 352
           F++  L+ +L +  S+ S A L    R  T E+ LLP++ S  TC ++
Sbjct: 77  FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123


>U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform a protein.
          Length = 489

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 209 FQLPKLYAKLHYCVSSPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 352
           F++  L+ +L +  S+ S A L    R  T E+ LLP++ S  TC ++
Sbjct: 77  FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123


>U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform b protein.
          Length = 475

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 209 FQLPKLYAKLHYCVSSPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 352
           F++  L+ +L +  S+ S A L    R  T E+ LLP++ S  TC ++
Sbjct: 77  FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123


>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
           protein Y39B6A.30 protein.
          Length = 1408

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +2

Query: 134 KKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSSPSTAKLSGTDR 289
           +  + RNI  A+A+  +N+AS   M  + KL  +L   VS PS    SG  R
Sbjct: 260 ENLIKRNIDLASALSAVNEASRSDMMTVSKLSDRL---VSIPSRKYTSGFSR 308


>AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gated
           chloride channel protein.
          Length = 489

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 209 FQLPKLYAKLHYCVSSPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 352
           F++  L+ +L +  S+ S A L    R  T E+ LLP++ S  TC ++
Sbjct: 77  FEIDILFTQLWHD-SALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,074,924
Number of Sequences: 27780
Number of extensions: 144614
Number of successful extensions: 398
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)