Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00943
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    68   3e-12
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    38   0.002
12_01_0152 - 1168928-1169377                                           28   3.5  
11_01_0155 - 1287003-1287452                                           28   3.5  
12_02_0172 - 14891923-14892102,14892894-14892980                       27   8.0  
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721...    27   8.0  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 67.7 bits (158), Expect = 3e-12
 Identities = 38/87 (43%), Positives = 48/87 (55%)
 Frame = +1

Query: 13  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 192
           M ++K  ELR K+               + LRVAKVTGG  +KLSKI+VVR +IARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 193 YHQKMKVNLRNHYKNKKYKPLI*EPRR 273
             QK +  LR  YK K   PL   P++
Sbjct: 61  ISQKQRAALREAYKKKSLLPLDLRPKK 87



 Score = 39.1 bits (87), Expect = 0.001
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 18/91 (19%)
 Frame = +3

Query: 162 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKH------------ 305
           + S    L  +S +      +  +K+ +   DLR KKTRA+R+ LTKH            
Sbjct: 51  RTSIARVLTVISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTF 110

Query: 306 ------EAKIKTRKEIRKKSLFPPRVYAVKA 380
                 +  +KT +E +++  FP R YA+KA
Sbjct: 111 SMVAISQLSLKTEREKKREKYFPMRKYAIKA 141


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = +1

Query: 1   VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 180
           VTV M ++K   LR ++               + LRVA+VTGG  +KLS I+ VR A+  
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162

Query: 181 VY 186
            Y
Sbjct: 163 AY 164



 Score = 31.5 bits (68), Expect = 0.28
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 231 QKQEIQAFDLRAKKTRAMRKALTKHEAKI 317
           +K+ +   DLR KKT A+R+ LTKH+  +
Sbjct: 167 KKKSLLPLDLRPKKTCAIRRRLTKHQGML 195


>12_01_0152 - 1168928-1169377
          Length = 149

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 115 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 204
           +V GG   K S+I  +R+AIA+  + Y+QK
Sbjct: 74  RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101


>11_01_0155 - 1287003-1287452
          Length = 149

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 115 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 204
           +V GG   K S+I  +R+AIA+  + Y+QK
Sbjct: 74  RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101


>12_02_0172 - 14891923-14892102,14892894-14892980
          Length = 88

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 109 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYK 249
           +A +  GV  K+S       A  R    +V H+ +++  RNH  ++KY+
Sbjct: 1   MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYR 49


>04_04_0623 +
           26669284-26669421,26670906-26671564,26671948-26672140,
           26672220-26672284,26672399-26672609,26673284-26673515,
           26674463-26674521,26674651-26674680,26674761-26674850
          Length = 558

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 207 HLLVIHNVNTCDSFSYNTDLG 145
           H   +HN N CDS  Y  D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,310,880
Number of Sequences: 37544
Number of extensions: 123626
Number of successful extensions: 361
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)