Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00943
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...    72   1e-13
Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical pr...    32   0.15 
Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical pr...    32   0.15 
X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomera...    32   0.15 
AC006627-9|AAK85464.1|  367|Caenorhabditis elegans Hypothetical ...    30   0.78 
AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical...    29   1.0  
Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical ...    27   7.2  
U23448-8|AAL27226.1|  849|Caenorhabditis elegans Dnaj domain (pr...    26   9.5  
U23448-7|AAM81128.1|  868|Caenorhabditis elegans Dnaj domain (pr...    26   9.5  
U23448-6|AAL27225.1|  915|Caenorhabditis elegans Dnaj domain (pr...    26   9.5  
U23448-5|AAL27227.1|  912|Caenorhabditis elegans Dnaj domain (pr...    26   9.5  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score = 72.1 bits (169), Expect = 1e-13
 Identities = 39/81 (48%), Positives = 46/81 (56%)
 Frame = +1

Query: 13  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 192
           M K+KC  LR +                  LRV+KVTGG ASKLSKIRVVRK IAR+  V
Sbjct: 1   MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60

Query: 193 YHQKMKVNLRNHYKNKKYKPL 255
            +Q  K  LR  Y + KYKP+
Sbjct: 61  INQTQKQELRKFYADHKYKPI 81



 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
 Frame = +3

Query: 231 QKQEIQAF---------DLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 380
           QKQE++ F         DLR KKTRA+R+ LT HE  +++ K+  K      R +AVKA
Sbjct: 65  QKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVKA 123


>Z93385-5|CAB07639.1|  734|Caenorhabditis elegans Hypothetical
           protein M01E5.5b protein.
          Length = 734

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 228 LQKQEIQAFDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 344
           L+K + +A D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 267 LKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 306


>Z93385-4|CAB07640.1|  806|Caenorhabditis elegans Hypothetical
           protein M01E5.5a protein.
          Length = 806

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 228 LQKQEIQAFDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 344
           L+K + +A D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 339 LKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


>X96762-1|CAA65537.1|  806|Caenorhabditis elegans DNA topoisomerase
           protein.
          Length = 806

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 228 LQKQEIQAFDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 344
           L+K + +A D   K+ R +RKA+TK E  KIK  KE   K
Sbjct: 339 LKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378


>AC006627-9|AAK85464.1|  367|Caenorhabditis elegans Hypothetical
           protein E01A2.7 protein.
          Length = 367

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 279 HG-SSWLLNQRLVFLVFVVVSKIDLHLLVIHNVNT 178
           HG S W+LN R V L  VV SK   H +VI + N+
Sbjct: 112 HGLSHWILNNRTVRLFVVVHSKTFKHSIVILDYNS 146


>AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical
           protein F33D4.6b protein.
          Length = 648

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = +3

Query: 183 LHCVSPEDEGQS*KPLQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEIRK 341
           ++ +  E+E    KP++++E +A     KK R MRK+   H+   K +KEIRK
Sbjct: 374 VNILQKENEKVEEKPVEEEE-EATTEPPKKKRKMRKS---HKTSKKEKKEIRK 422


>Z81588-4|CAB04713.1|  413|Caenorhabditis elegans Hypothetical
           protein T07D10.4 protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 362 SRWEERFLSDLFPRLDLCFVFSKSLAHSTGL 270
           S W+   +  +FPR+D C   S    + TG+
Sbjct: 232 SAWDYSDIDPIFPRVDYCLKMSAFNGYPTGM 262


>AL031624-1|CAA20940.1|  413|Caenorhabditis elegans Hypothetical
           protein H16D19.1 protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 362 SRWEERFLSDLFPRLDLCFVFSKSLAHSTGL 270
           S W+   +  +FPR+D C   S    + TG+
Sbjct: 232 SAWDYSDIDPIFPRVDYCLKMSAFNGYPTGM 262


>U23448-8|AAL27226.1|  849|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform b
           protein.
          Length = 849

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 228 LQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEI 335
           LQ++E+ + DL+   ++A+R     H    KTR  I
Sbjct: 356 LQRKELSSADLKLNDSKAVRTKNNDHRETGKTRNTI 391


>U23448-7|AAM81128.1|  868|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform d
           protein.
          Length = 868

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 228 LQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEI 335
           LQ++E+ + DL+   ++A+R     H    KTR  I
Sbjct: 356 LQRKELSSADLKLNDSKAVRTKNNDHRETGKTRNTI 391


>U23448-6|AAL27225.1|  915|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform a
           protein.
          Length = 915

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 228 LQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEI 335
           LQ++E+ + DL+   ++A+R     H    KTR  I
Sbjct: 356 LQRKELSSADLKLNDSKAVRTKNNDHRETGKTRNTI 391


>U23448-5|AAL27227.1|  912|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform c
           protein.
          Length = 912

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 228 LQKQEIQAFDLRAKKTRAMRKALTKHEAKIKTRKEI 335
           LQ++E+ + DL+   ++A+R     H    KTR  I
Sbjct: 355 LQRKELSSADLKLNDSKAVRTKNNDHRETGKTRNTI 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,316,482
Number of Sequences: 27780
Number of extensions: 115579
Number of successful extensions: 455
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)