Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00942
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    31   0.21 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    28   1.5  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    28   1.5  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    28   1.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   5.9  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    26   5.9  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   7.8  

>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 249 QHRLKLDATRNNDNIAFHDDDQLDLLQKIAEL-NKQKSQLMHHVFMVSCENRNLWNKIST 425
           Q+   L++  N  N  +   + +D L K  E+ + +K +   H+  +  E  NLWNK+  
Sbjct: 220 QYEQLLESHTNRPNDVYVTQELIDQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQV 279

Query: 426 IKN 434
             N
Sbjct: 280 SPN 282


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 291 IAFHDDDQLDLLQKIAELNKQKSQLM 368
           I+FHD  +LDL++ IA + K + +L+
Sbjct: 281 ISFHDTSRLDLVRNIASIPKSRWKLV 306


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 460 TFSLLGLLQFLIVDILFHRFLFSHD 386
           TF ++GL  + +V+   HRFLF  D
Sbjct: 187 TFFIIGLFTWTLVEYTMHRFLFHLD 211


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
 Frame = +3

Query: 222 TQNKCFGE*QHRLKLDATRNNDNIAFHDDDQL-DLLQKIAELNKQKSQLMHHVFMVSCEN 398
           TQN+   E ++ L+L A++N+D      + +L ++ +++  L  + S  ++ +  +  EN
Sbjct: 470 TQNREIDEEKNHLRLLASKNSDKALAETNIRLQEVTKELETLRMKNSNDLNEIHDLREEN 529

Query: 399 RNLWNKISTI 428
             L  KI +I
Sbjct: 530 EGLTLKIDSI 539


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 318  DLLQKIAELNKQKSQLMHHVFMVSCENRNL 407
            D+LQ + E NKQ S  +H  F +  E RN+
Sbjct: 1988 DILQLLKE-NKQMSSQLHECFQLLLEIRNV 2016


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 593 KSNLVDQYEQMAQLHRDEDMLDVDSIGF 676
           K +L+    Q A LH D+  + V  IGF
Sbjct: 291 KGSLIQILRQFASLHSDKKQISVGLIGF 318


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 411 NKISTIKNCNKPNKENVKNPLVRTNTYIQ 497
           +K+++I N +KPN    +NP+  T+  I+
Sbjct: 179 SKVASISNTSKPNPIVSENPISATSVSIE 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,972
Number of Sequences: 5004
Number of extensions: 51084
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)