Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00942
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 33 0.29
06_01_0769 - 5745324-5746970 30 1.5
07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809... 29 2.7
11_02_0114 + 8456620-8457600,8457612-8457758,8457806-8458018 29 3.5
06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831 29 3.5
02_02_0211 + 7898434-7898574,7898759-7899349,7899575-7899821,790... 29 3.5
10_04_0008 + 7442371-7442982 28 6.2
08_02_0175 + 13772394-13773094,13773329-13773860 28 6.2
05_03_0318 - 12292969-12293222,12293305-12293898,12297102-122974... 28 6.2
04_01_0409 - 5409018-5410268 28 6.2
01_03_0282 - 14580875-14580891,14582126-14585855 28 6.2
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 303 DDDQLDLLQKIAELNKQKSQLMHHVFMVSCENRNLWNKISTI 428
DD Q ++LQ+I +N+ Q + +V EN+ L K+S++
Sbjct: 33 DDKQTEMLQEILRMNRMMQQQNERIKLVLRENQELREKVSSL 74
>06_01_0769 - 5745324-5746970
Length = 548
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 268 SSFKRCCHSPKHLFCVVVIDNDPSWHEEPTREHCGD 161
+S + C HSP L C D DP+ H P HC D
Sbjct: 505 ASVEPCLHSPPPLVCRARRDRDPAAH-LPFLRHCED 539
>07_03_1696 - 28779455-28779733,28779813-28780074,28780805-28780956,
28781765-28781961,28782258-28782462,28782737-28782982,
28783603-28783719,28784206-28784397,28784480-28784693,
28784835-28784926,28784952-28785001,28785494-28785812,
28785908-28786068,28786407-28786650,28787212-28787467,
28787634-28787834,28788568-28788910,28789003-28789064,
28789645-28789851,28790170-28790978
Length = 1535
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +3
Query: 168 QCSRVGSSCHEG--SLSITTTQNKCFGE*QHRLKLDATRNNDNIAFHDDDQLDLLQKIAE 341
+C R +C++G SL I + F + RL L NND++ ++ DL ++ E
Sbjct: 960 ECQRYCPNCYDGNGSLCIQCELDDLFQGYEARLFLVKKSNNDSVIASVEEARDLQRRKYE 1019
Query: 342 LNK 350
LN+
Sbjct: 1020 LNQ 1022
>11_02_0114 + 8456620-8457600,8457612-8457758,8457806-8458018
Length = 446
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 393 ENRNLWNKISTIKNCNKPNKENVKNPLVR 479
E W IS C KP N+ NP +R
Sbjct: 131 EKNRFWEDISGAPICKKPRTNNIHNPTLR 159
>06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831
Length = 711
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 393 ENRNLWNKISTIKNCNKPNKENVKNPLVR 479
E W IS C KP N+ NP +R
Sbjct: 454 EKNRFWEDISGAPICKKPRTNNIHNPTLR 482
>02_02_0211 +
7898434-7898574,7898759-7899349,7899575-7899821,
7900020-7900118,7900158-7900321,7900371-7900870,
7901007-7901256,7901461-7901549,7901823-7902064,
7902175-7902479,7902798-7902906,7903150-7903313
Length = 966
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 393 ENRNLWNKISTIKNCNKPNKENVKNPLVR 479
E W IS+ C KP +++ NP +R
Sbjct: 818 EKNRFWEDISSAPICKKPRTDDIHNPTLR 846
>10_04_0008 + 7442371-7442982
Length = 203
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 393 ENRNLWNKISTIKNCNKPNKENVKNPLVR 479
E W IS C KP + ++ NP +R
Sbjct: 96 EKNRFWEDISGAPICKKPKRNDIHNPTLR 124
>08_02_0175 + 13772394-13773094,13773329-13773860
Length = 410
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 393 ENRNLWNKISTIKNCNKPNKENVKNPLVR 479
E W IS C KP ++ NP++R
Sbjct: 162 EKNRFWEDISGAPICKKPRTNDIHNPILR 190
>05_03_0318 -
12292969-12293222,12293305-12293898,12297102-12297415,
12297712-12297893,12297960-12298187,12298234-12298698,
12299393-12299443
Length = 695
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 393 ENRNLWNKISTIKNCNKPNKENVKNPLVR 479
E W IS+ C KP ++ NP +R
Sbjct: 457 EKNRFWEDISSAPICKKPRTNDIHNPTLR 485
>04_01_0409 - 5409018-5410268
Length = 416
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 393 ENRNLWNKISTIKNCNKPNKENVKNPLVR 479
E W IS+ C KP ++ NP +R
Sbjct: 81 EKNRFWEDISSAPICEKPRTNDIHNPTLR 109
>01_03_0282 - 14580875-14580891,14582126-14585855
Length = 1248
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 79 F*EIMDTSSIVSFNNDSTFQATLKGDYNHHSVHELALHAMRDRCLLLQRRINVLE 243
F ++ +TS + D Q K H +H++AL+ MR+ C+ + R N ++
Sbjct: 472 FQDVDETSLFKMYRRDKLCQFR-KTCKIHDLMHDIALYVMREECVTVMGRPNSIQ 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,768,338
Number of Sequences: 37544
Number of extensions: 266693
Number of successful extensions: 747
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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