Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00939
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 145 7e-36
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 145 7e-36
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 145 7e-36
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 105 5e-24
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 29 0.56
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 26 5.2
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 9.1
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 9.1
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 145 bits (351), Expect = 7e-36
Identities = 70/78 (89%), Positives = 74/78 (94%)
Frame = +1
Query: 256 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV 435
TELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRV
Sbjct: 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRV 118
Query: 436 TIMPKDIQLARRIRGERA 489
TI PKD+QLARR+RGER+
Sbjct: 119 TIQPKDMQLARRLRGERS 136
Score = 114 bits (274), Expect = 2e-26
Identities = 53/56 (94%), Positives = 56/56 (100%)
Frame = +2
Query: 83 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQ 250
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQ
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQ 56
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 145 bits (351), Expect = 7e-36
Identities = 70/78 (89%), Positives = 74/78 (94%)
Frame = +1
Query: 256 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV 435
TELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRV
Sbjct: 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRV 118
Query: 436 TIMPKDIQLARRIRGERA 489
TI PKD+QLARR+RGER+
Sbjct: 119 TIQPKDMQLARRLRGERS 136
Score = 114 bits (274), Expect = 2e-26
Identities = 53/56 (94%), Positives = 56/56 (100%)
Frame = +2
Query: 83 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQ 250
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQ
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQ 56
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 145 bits (351), Expect = 7e-36
Identities = 70/78 (89%), Positives = 74/78 (94%)
Frame = +1
Query: 256 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV 435
TELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRV
Sbjct: 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRV 118
Query: 436 TIMPKDIQLARRIRGERA 489
TI PKD+QLARR+RGER+
Sbjct: 119 TIQPKDMQLARRLRGERS 136
Score = 114 bits (274), Expect = 2e-26
Identities = 53/56 (94%), Positives = 56/56 (100%)
Frame = +2
Query: 83 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQ 250
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQ
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQ 56
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 105 bits (253), Expect = 5e-24
Identities = 55/81 (67%), Positives = 67/81 (82%), Gaps = 6/81 (7%)
Frame = +1
Query: 256 TELLIRKLPFQRLVREIAQDF----KTD--LRFQSAAIGALQEASEAYLVGLFEDTNLCA 417
T+LLI++LPF R+VREI+ +F TD LR+QS A+ LQEA+EA+LV LFEDTNLCA
Sbjct: 39 TDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCA 98
Query: 418 IHAKRVTIMPKDIQLARRIRG 480
IHAKRVTIM +D+QLARRIRG
Sbjct: 99 IHAKRVTIMQRDMQLARRIRG 119
Score = 35.1 bits (77), Expect = 0.011
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
Frame = +2
Query: 158 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQ 250
A+KS + G + +P RYRPGT ALREIR+YQ
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQ 36
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 29.5 bits (63), Expect = 0.56
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Frame = +1
Query: 199 TSLSPWYSGPS*NSSLSEVTELLIR-KLPFQRLVREIAQDFKTDLRFQSAAIGALQEASE 375
+S+ PWY GPS L +T L + PF + +D T L + A G++++ S
Sbjct: 440 SSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIASKYKDLGTILEGKIEA-GSIKKNSN 498
Query: 376 AYLVGLFEDTNLCAIHAKRVTIMPKDI---QLARRIRGE 483
++ + + + AI+ + + I Q+ R+RG+
Sbjct: 499 VLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRGD 537
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 78 KQWLVLNKQPVNLLEVKLRVNNLLQ 152
K++L L K PV L++ K N+L+
Sbjct: 12 KEYLALQKNPVELVDAKPATENILE 36
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -2
Query: 411 QVGVFEQANEISLACLLESSDGGRLETQISFEILSDFSHKTLERQLTDK 265
Q+G F +AN I A + + E + EIL ER T K
Sbjct: 112 QIGAFFKANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPERLSTKK 160
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 366 LLESSDGGRLETQISFEILSD 304
L + DGG+LE Q+ +++L D
Sbjct: 72 LFTTDDGGKLELQVYYQLLVD 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,991
Number of Sequences: 5004
Number of extensions: 57323
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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