Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00936
         (768 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    46   0.001
UniRef50_Q235N4 Cluster: Putative uncharacterized protein; n=1; ...    36   0.84 

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 45.6 bits (103), Expect = 0.001
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -3

Query: 202 RWVDELTAHLVLSGYWSP 149
           RWVDELTAHLVLSGYWSP
Sbjct: 158 RWVDELTAHLVLSGYWSP 175


>UniRef50_Q235N4 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2083

 Score = 36.3 bits (80), Expect = 0.84
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = -2

Query: 425 SSRLLFNRQQNPSMYLFLTT*ITLRSQCIFVNIFYKLNIIRYTSPFCFEKE*MHIYDFMI 246
           S+ ++   QQ P +YLF ++ I++++  +  NIFY +NII   S    ++  M IY+  I
Sbjct: 632 STNIISLDQQTP-LYLFQSSSISIKNMRVSNNIFYNINIINIQSYIQTQEIQMEIYNVFI 690

Query: 245 A-NYKKTIIDFFFI 207
           + N    I   FF+
Sbjct: 691 SDNILNQIQSNFFM 704


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,580,769
Number of Sequences: 1657284
Number of extensions: 14402585
Number of successful extensions: 25297
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25295
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)