Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00936
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    29   0.97 
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    28   1.3  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   3.0  
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar...    27   3.9  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.9  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    26   5.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   6.8  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   9.0  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   9.0  

>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 404 RQQNPSMYLFLTT*ITLRSQCIFVNIFYKLNIIRYTSPF 288
           +Q  P    +L T + ++S+C +VN +Y L++I +   F
Sbjct: 172 KQLCPKWNQYLETCVLVQSRCFYVNSYYGLSLIPFFDIF 210


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 183 VSSSTHLSNKKKIYYSFFIISYHKIINMHLLFFKTKWRRITDNV*FIKN 329
           +SS++H S    I+ +F     H II+  +LF+++K +  T +  FI+N
Sbjct: 398 LSSNSHYSQFWAIFQAFVWRFLHSIIHAFILFYQSKSKAWTKH--FIRN 444


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 667 VYFIKAYHGMKSVFRFLFIR-FKVNG 741
           ++F+K YH    VFR  FIR F++ G
Sbjct: 187 LFFLKQYHNFMFVFRDYFIRDFELGG 212


>SPAC1002.01 ||SPAC1610.05|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 180 AVSSSTHLSNKKKIYYSFFIISYHKIINMHLLFFKTK-WRRI 302
           A+  S  L NK+K +YS FI+      + H +   TK W+R+
Sbjct: 25  ALKGSFILLNKRKFHYSPFILQEKVQSSNHTIRSDTKLWKRL 66


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 607  IVFCISTSCMNSVLMRFP*FVYFIKAYHG 693
            I + +   C+  V  RFP  +Y +  YHG
Sbjct: 1283 IFYSVWNQCIAEVWKRFPLDIYHVNDYHG 1311


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 23  VLCLRNVTKIKMFVRNNCNCSYT*DLRTCISRWVTHLRCGC 145
           V+CL + TK    V   C   +    R CI++W+   R  C
Sbjct: 322 VICLESFTKGDKVVALPCKHEFH---RPCIAKWIVDYRHAC 359


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 607  IVFCISTSCMNSVLMRFP*FVYFIKAYHG 693
            I +     C+  ++ R+P  VY I  YHG
Sbjct: 1250 IFYSAWNQCIAGIIRRYPIDVYHINDYHG 1278


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 180 AVSSSTHLSNK-KKIYYSFFIISYHKI 257
           ++SS   +  K KKI+YSFF+ + H I
Sbjct: 404 SISSDFQIPFKTKKIFYSFFVKTLHAI 430


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 197 GGRAHSPSGIKWLLEPIDIHN 135
           GG  H P+ + WLL P DI++
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,869
Number of Sequences: 5004
Number of extensions: 66269
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)