Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00936
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75...    30   1.8  
01_06_0355 + 28657833-28660665,28660762-28661126                       29   5.4  
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432...    28   7.1  
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454           28   9.4  

>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
            752025-753905,754093-754296,754807-754899,755036-755122,
            755241-755328,755533-755645,755943-757259,757398-758672,
            759166-759273
          Length = 2233

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 467  RCCHKL-NMNRALILVARVGHSYIFFSTIT 553
            R C KL N++R LI + R GH  + FST+T
Sbjct: 1290 RSCGKLWNLDRILIKLHRSGHRVLLFSTMT 1319


>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 195 WTSSQPI--WY*VVTGAHRHPQRKCVTHLEI 109
           WT++ P   W  V  G HRHP R  VT LE+
Sbjct: 56  WTAAAPYCGWLGVTCGGHRHPLR--VTALEL 84


>09_03_0042 +
           11842263-11842698,11842799-11842896,11843082-11843217,
           11843349-11843509,11843603-11843753,11843855-11843952,
           11844142-11844277,11844404-11844532,11844622-11844720,
           11844814-11844909,11845002-11845100,11845201-11845296,
           11846394-11846628,11846752-11846873,11846993-11847114,
           11847275-11847345,11847940-11848027,11848374-11848439,
           11848676-11848795
          Length = 852

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 174 RWAVSSSTHLSNKKKIYYSFFIISYHKIINMHLL 275
           RWA + + H+  K+K Y    I+ +   +N+ LL
Sbjct: 11  RWAATYTKHVKQKRKAYQDGAIVLHRASVNLVLL 44


>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
          Length = 748

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 696 HTVIGLYEIDESRKSHQYAIHA*GRNTKYNYH 601
           + V G  +IDE  +S +Y  H   RNT  +YH
Sbjct: 304 YLVGGCNDIDECARSDEYPCHGDCRNTVGDYH 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,976,352
Number of Sequences: 37544
Number of extensions: 374929
Number of successful extensions: 555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)