Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00935
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    29   0.54 
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    29   0.71 
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    28   1.6  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   2.2  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    27   3.8  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   6.6  
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    25   8.7  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   8.7  

>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 593 SMNIGVHSEIFCFWNFPYSWKISLG-IRKSHYIAAILLDHPTHVVGNGFPYQYILA 429
           S+NI + S          ++  S G ++ SHY+A   L+HPT    NG PY  + +
Sbjct: 339 SLNIYLFSAFLAINGVVLAFTSSPGFVQSSHYVAEYELEHPTFFGHNG-PYTQLFS 393


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -2

Query: 169 HLDTAIAVPGQLVALYVLSDAVLAVA*RSAG*TSGTK---PEQRTAPELN 29
           H D  IAVPG L+ +    D  L  A R  G   G+K   PE  T  E+N
Sbjct: 305 HNDLKIAVPGGLIGVGTTVDPTLCRADRLVGQVLGSKGNLPEVYTELEIN 354


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
 Frame = +2

Query: 185 RQVLQTIRFFLRKSTT----CSSIQTEDVRSVTNPENNEASIEHSHHTVDT 325
           R V++ IR +  K  T     SS+QTE  R      N+E  IE    TV++
Sbjct: 823 RPVIEEIRIYREKIQTETQRLSSLQTELSRLRDEKRNSEVDIERHRQTVES 873


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 554 WNFPYSWKISLGIRKSHYIAAILLDHPTHVVGNGFPYQYILAW 426
           WN  Y  +  +G  +  YIA  LLD  +    + FP +  + W
Sbjct: 605 WNMAYMHEYGIGRDQDIYIARRLLDELSSNQNSYFPLKVAIFW 647


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 123 TYYRTLCWRWPEGRL 79
           +Y+  LCW WP+ R+
Sbjct: 356 SYFTVLCWIWPKNRV 370


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 232  RRRFSKEESDGLQYLAHEE-HCHLDTAIAVP 143
            RRR+SK+ S  L+ + +EE H  L + I +P
Sbjct: 946  RRRYSKQHSKHLESVVYEEYHPILHSNITIP 976


>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 351 TVTQGTCGFCTLEGNCLFQRLLRLTPSQY 437
           T T   C  CTL G C+  RL R  P ++
Sbjct: 103 TPTIPHCSMCTLIGLCIRVRLERCLPPRF 131


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 99  ANTASDNTYSATSWPGTAMAVSR*QCSSCAK 191
           A+  + N+ S+ ++   A A+SR +CS C K
Sbjct: 317 ASEVNPNSTSSVTFSDFAAAISRSRCSRCKK 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,712
Number of Sequences: 5004
Number of extensions: 63033
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)