Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00935
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0163 + 14588041-14588266,14588835-14589001,14589880-145900...    29   5.2  
03_06_0401 - 33678814-33679185,33679564-33679676,33679785-336798...    29   5.2  
05_03_0561 - 15476484-15476649,15476814-15476893,15476971-154770...    28   6.9  
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075...    28   9.1  

>07_03_0163 +
           14588041-14588266,14588835-14589001,14589880-14590068,
           14590193-14590315,14590531-14590793,14590882-14590976,
           14591529-14591965,14592461-14592481
          Length = 506

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 224 STTCSSIQTEDVRSVTNPENNEASIEHSHHTVDTGLDQPIESH-RNTRDLRFLYPRGKL 397
           S++ ++  +  + +++ P+   A   HS    D GL +PIE++    RD   ++ R +L
Sbjct: 145 SSSSNTDPSASIENLSQPKRPRAEFSHSDIIGDPGLHKPIEAYPPEIRDQSIVFERMQL 203


>03_06_0401 -
           33678814-33679185,33679564-33679676,33679785-33679834,
           33680024-33680103,33680541-33680635,33681079-33681124
          Length = 251

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/49 (24%), Positives = 28/49 (57%)
 Frame = +2

Query: 206 RFFLRKSTTCSSIQTEDVRSVTNPENNEASIEHSHHTVDTGLDQPIESH 352
           R +LRK+    +   ++++++T  EN +A I H H  +++ + +  + H
Sbjct: 106 RKYLRKNIWLQTWLRQEIQALTRDENVDAIIYHIHGVIESFMKRQEKGH 154


>05_03_0561 -
           15476484-15476649,15476814-15476893,15476971-15477030,
           15477117-15477210,15477287-15477421,15477601-15477656,
           15478359-15478460,15478544-15478651,15479206-15479283,
           15479432-15479521,15480061-15480123
          Length = 343

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +2

Query: 170 TMFLVRQVLQTIRFFLRKSTTCSSIQTEDVRSVTNPENNEASIEHSHHTVDTGLDQPIES 349
           T  +   V QTI+     +   S ++++  + V +P+N E  I      +D  LD P+ +
Sbjct: 39  TSVIHANVYQTIKILYEGAKELSQVESDSSKYVISPDNQE--IGEKLSDIDGRLDYPLLN 96

Query: 350 HRNTRDLRFLY 382
                D++ L+
Sbjct: 97  KELVLDVKRLW 107


>04_04_0859 +
           28805836-28805842,28806405-28806492,28807474-28807558,
           28807638-28807763,28807819-28807968,28808497-28808541,
           28808612-28808875,28809843-28809887,28810395-28810430,
           28812048-28812816,28813063-28813925,28814024-28814182,
           28814440-28814558,28815356-28815417,28816677-28816805,
           28817395-28817460,28817757-28817890,28818025-28818162,
           28818630-28818889,28818996-28819107,28819590-28819675,
           28820655-28820735,28822841-28822928,28823222-28823260,
           28823847-28823964,28824063-28824130,28824884-28824981,
           28825238-28825397,28825691-28825816,28825876-28825945,
           28826046-28826449
          Length = 1664

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 333 TSRSRATVTQGTCGFCTLEGNCLFQRLL 416
           T ++  T  QGTC +C+ +G+ L+  ++
Sbjct: 151 TKKADGTTIQGTCKYCSKDGSKLYPSII 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,056,938
Number of Sequences: 37544
Number of extensions: 407626
Number of successful extensions: 1161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)