Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00935
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    27   0.19 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.3  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    23   4.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.3  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -1

Query: 719 LFNLINNTYEYLHYLN*NGHF----KILCIFMQNY*KYHLNLSNYDSMNIGVHSEIFCFW 552
           + + ++N Y+Y +Y N N ++         +  NY K + N++  + + + V   I+C  
Sbjct: 314 IISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVPVPIYC-G 372

Query: 551 NFP 543
           NFP
Sbjct: 373 NFP 375


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 233 CSSIQTEDVRSVTNPENNEASIEHSHHTV 319
           C SI  +DV S  +   +  ++EHS + +
Sbjct: 10  CLSIACQDVTSAIHQRKSSKNLEHSMNVI 38


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 632 NY*KYHLNLSNYDSMNIGVHSEIFCFWNFP 543
           NY K + N+ N + + + V   I+C  NFP
Sbjct: 348 NYKKLYYNIINIEQIPVPVPVPIYC-GNFP 376


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 498 NIMRLSDSEGYFPRIG 545
           NI+ +S +EG+F  IG
Sbjct: 36  NILHMSSAEGWFKAIG 51


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 584 IGVHSEIFCFWNFPYSWKISLGIRKSHYIAAIL 486
           I  H +    WN+ Y WK    +  SH +A +L
Sbjct: 617 INPHQQHLDQWNWVYEWK---ELIPSHIMAGLL 646


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 78  PADLQATANTASDNTYSATSWPGTAM 155
           P   Q     A+ N YS T WP T++
Sbjct: 762 PQGSQGLLQCATSN-YSTTRWPATSV 786


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 208 SDGLQYLAHEEHCHLDTA 155
           + G+QYLA   + H D A
Sbjct: 745 ASGMQYLAEMNYVHRDLA 762


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,851
Number of Sequences: 438
Number of extensions: 4757
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)