Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00931
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   8.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.6  

>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 69  MIKLFSLKQQKKDEEGSTRGGGSQKKAS 152
           M +  ++ Q+KK+   + +GGGS   AS
Sbjct: 1   MSRSINMDQEKKNNVENLKGGGSTTPAS 28


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 181 KSFVIRNWAADAFFCDPPPLVEPSS 107
           K+  + +W      C PPP   P S
Sbjct: 378 KNPAMGHWQMSCVACSPPPRQTPPS 402


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 171 TKDLNELNLPKTCNTEFPD 227
           T +LN  N P TC T+  D
Sbjct: 13  TWELNATNSPHTCRTKNGD 31



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 129 GGSQKKASAAQLRITKDLNE 188
           GGS   A  A L+I KD+ E
Sbjct: 305 GGSSGAALIAALKIAKDIPE 324


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +2

Query: 548 NNTFRELCEAATSAHLISND 607
           N    ELC      H+IS D
Sbjct: 264 NEDLEELCRGCNLGHMISYD 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,047
Number of Sequences: 438
Number of extensions: 3980
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)