Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00929X
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    29   0.62 
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    26   3.3  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   5.8  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    25   7.7  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    25   7.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.7  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   7.7  

>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 62  LCKRSRRNANIELCCVEMFYQFCYSSSANDHCFVMP 169
           LCK+  RNA    CC ++F + C  ++  D  F  P
Sbjct: 284 LCKKLARNACRTPCCDKLFCEECIQTALLDSDFECP 319


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 494 VGVTGW*TRGLHAVSASEDQRLWTGADLWRL--ASSVHAPARAFRY 363
           V V  W TR  + ++   D  +W+  DL  L  +SSV  P  +F++
Sbjct: 340 VNVLSWNTRVPNLLATGADNGVWSVWDLRSLKSSSSVATPVASFKW 385


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 415 TSGASQVPFTHPLVHFGTQLSVFA-SYIQPVLHD*LFSMLTYDSV 284
           +  ASQ P T+P  H   Q+S     Y  P L D   S+L  D +
Sbjct: 19  SQNASQPPETYPFYHEVRQMSQHPWMYEDPELQDYALSILPLDKL 63


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 267 SGSCVITESYVSIEKSQSCKTGWIYEAKTDSCVPK 371
           +G C IT  + + + + SC   W  + K DS V K
Sbjct: 214 AGDCKITLVHPNEQPNSSCLEYWGQDFKEDSLVQK 248


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 290 IIREH*EESIMQDRLDIRGEDRQLCTEMHERVRERNLRGARGLHLSRASGPQTR 451
           I  E  +E     +L+  GE+ +      ER+++R ++  R  +L R   P  R
Sbjct: 60  ISSESSDEEAELKKLEEEGEEVEKILRDEERIKKRKIQKNRAANLQRTLQPPKR 113


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 448 ADTAWSPRVHQPVTPTAAAPIQ--RVHLREQHDRFERLPV 561
           A+TA+ P+            I   ++++R+ H RFE LPV
Sbjct: 125 AETAYDPKTQTFTESLITRMIDNIQINIRDIHIRFEHLPV 164


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 297 VSIEKSQSCKTGWIYEAKTDSCVPKCTSGCVNGTCEAPE 413
           +S+ +     TG IYEA T++  PK  S         PE
Sbjct: 330 MSLARGLDYYTGIIYEAVTEASAPKIKSSAEKKKSADPE 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,381
Number of Sequences: 5004
Number of extensions: 45585
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)